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changeset 17:0dc3dc9226e4 draft

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planemo upload for repository https://github.com/phac-nml/mob-suite commit 4046a822176aafd34a2ae8dc24ad6d0337fafbe6-dirty
author dfornika
date Tue, 25 Jun 2019 15:19:25 -0400
parents 9325ba7f31f4
children dce4f8d7b19f
files compress_plasmids.xml
diffstat 1 files changed, 26 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/compress_plasmids.xml	Tue Jun 25 15:19:25 2019 -0400
@@ -0,0 +1,26 @@
+<tool id="compress_plasmids" name="Compress Plasmids" version="1.4.9.1">
+  <description>Compress plasmid contigs</description>
+  <requirements>
+  </requirements>   
+  <command detect_errors="exit_code">
+  <![CDATA[
+    #for $input in $inputs
+        cp '${input}' '${input.element_identifier}.fasta' &&
+    #end for
+    mkdir 'plasmids' && mv plasmid_* 'plasmids' &&
+    tar -cvzf plasmids.tar.gz plasmids
+  ]]>  
+  </command>
+  <inputs>
+    <param name="inputs" type="data_collection" format="fasta" multiple="true" label="Input" help="FASTA files with contig(s)"/>
+  </inputs>
+  <outputs>
+    <data name="output" format="tar" from_work_dir="plasmids.tar.gz" label="Plasmid contigs (compressed)"/> 
+  </outputs>
+  <tests>
+  </tests>
+  <help>
+  </help>
+  <citations>
+  </citations>
+</tool>