Mercurial > repos > dfornika > mob_suite

changeset 7:cc05569322a9 draft

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planemo upload for repository https://github.com/phac-nml/mob-suite commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty
author dfornika
date Mon, 24 Jun 2019 19:04:25 -0400
parents 066c1e903c30
children 1b64a4d31408
files mob_recon.xml
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/mob_recon.xml	Mon Jun 24 15:22:47 2019 -0400
+++ b/mob_recon.xml	Mon Jun 24 19:04:25 2019 -0400
@@ -14,8 +14,8 @@
     mob_recon  
       --num_threads \${GALAXY_SLOTS:-4}  
       --infile "${named_input}" 
-      --plasmid_db '${mob_suite_database_dir.fields.path}/references_updated.fasta'
-      --plasmid_mash_db '${mob_suite_database_dir.fields.path}/references_updated.fasta.msh'
+      --plasmid_db '${mob_suite_database.fields.path}/references_updated.fasta'
+      --plasmid_mash_db '${mob_suite_database.fields.path}/references_updated.fasta.msh'
     #if str($adv_param.unicycler_contigs) == "True":
       --unicycler_contigs 
     #end if   
@@ -39,7 +39,7 @@
   </command>
   <inputs>
     <param name="input" type="data" format="fasta" label="Input" help="FASTA file with contig(s)"/>
-    <param name="mob_suite_database_dir" type="select">
+    <param name="mob_suite_database" type="select">
       <options from_data_table="mob_suite_databases">
 	<validator type="no_options" message="No MOB-Suite databases are available" />
       </options>