# HG changeset patch
# User dfornika
# Date 1561417465 14400
# Node ID cc05569322a98dc6e9fbecdecece3fb67779a847
# Parent  066c1e903c30549f34c7742d008defa7c12399c7
planemo upload for repository https://github.com/phac-nml/mob-suite commit ded3b42d8a746eac2973cc17826160e43ac11186-dirty

diff -r 066c1e903c30 -r cc05569322a9 mob_recon.xml
--- a/mob_recon.xml	Mon Jun 24 15:22:47 2019 -0400
+++ b/mob_recon.xml	Mon Jun 24 19:04:25 2019 -0400
@@ -14,8 +14,8 @@
     mob_recon  
       --num_threads \${GALAXY_SLOTS:-4}  
       --infile "${named_input}" 
-      --plasmid_db '${mob_suite_database_dir.fields.path}/references_updated.fasta'
-      --plasmid_mash_db '${mob_suite_database_dir.fields.path}/references_updated.fasta.msh'
+      --plasmid_db '${mob_suite_database.fields.path}/references_updated.fasta'
+      --plasmid_mash_db '${mob_suite_database.fields.path}/references_updated.fasta.msh'
     #if str($adv_param.unicycler_contigs) == "True":
       --unicycler_contigs 
     #end if   
@@ -39,7 +39,7 @@
   </command>
   <inputs>
     <param name="input" type="data" format="fasta" label="Input" help="FASTA file with contig(s)"/>
-    <param name="mob_suite_database_dir" type="select">
+    <param name="mob_suite_database" type="select">
       <options from_data_table="mob_suite_databases">
 	<validator type="no_options" message="No MOB-Suite databases are available" />
       </options>