Mercurial > repos > dfornika > mob_suite

changeset 37:7124bff199fa draft

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planemo upload for repository https://github.com/phac-nml/mob-suite commit 0dd60ac52b9d34ee1f446182eda78cb8c01de6d1-dirty
author dfornika
date Wed, 25 Sep 2019 13:56:15 -0400
parents 005d11fcaf28
children 17a60dd45b31
files mob_recon.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/mob_recon.xml	Wed Sep 25 13:30:11 2019 -0400
+++ b/mob_recon.xml	Wed Sep 25 13:56:15 2019 -0400
@@ -32,7 +32,8 @@
     --min_mob_ident '${adv_param.min_mob_ident}'
     --min_con_ident '${adv_param.min_con_ident}'
     --min_rpp_ident '${adv_param.min_rpp_ident}'
-    --outdir '.'
+    --outdir '.' &&
+    mkdir ./plasmids && (cp plasmid*.fasta ./plasmids 2> /dev/null || true)    
   ]]>  
   </command>
   <inputs>