# HG changeset patch
# User dfornika
# Date 1569434175 14400
# Node ID 7124bff199fab33c11bb42289e06ee4966ef1f3d
# Parent  005d11fcaf282d695438b049abf97b2b880f86c0
planemo upload for repository https://github.com/phac-nml/mob-suite commit 0dd60ac52b9d34ee1f446182eda78cb8c01de6d1-dirty

diff -r 005d11fcaf28 -r 7124bff199fa mob_recon.xml
--- a/mob_recon.xml	Wed Sep 25 13:30:11 2019 -0400
+++ b/mob_recon.xml	Wed Sep 25 13:56:15 2019 -0400
@@ -32,7 +32,8 @@
     --min_mob_ident '${adv_param.min_mob_ident}'
     --min_con_ident '${adv_param.min_con_ident}'
     --min_rpp_ident '${adv_param.min_rpp_ident}'
-    --outdir '.'
+    --outdir '.' &&
+    mkdir ./plasmids && (cp plasmid*.fasta ./plasmids 2> /dev/null || true)    
   ]]>  
   </command>
   <inputs>