Mercurial > repos > dfornika > micall_lite

changeset 2:9860e4ad1401 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit c8241b460c9def5b434fa4350924599b09b17a69-dirty
author dfornika
date Fri, 20 Sep 2019 16:19:33 -0400
parents ddae1e5b4bb2
children 0244f4377440
files micall-lite.xml
diffstat 1 files changed, 6 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/micall-lite.xml	Fri Sep 20 15:59:42 2019 -0400
+++ b/micall-lite.xml	Fri Sep 20 16:19:33 2019 -0400
@@ -6,7 +6,7 @@
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">micall-lite</requirement>
     </requirements>
-    <version_command>micall --version</version_command>
+    <version_command>echo "@TOOL_VERSION@"</version_command>
     <command detect_errors="exit_code">
         <![CDATA[
           ln -s '${input_pair.forward}' '${input_pair.element_identifier}_R1.fastq.gz' &&
@@ -20,7 +20,11 @@
         <param format="fastq,fastq.gz" name="input_pair" type="data_collection" collection_type="paired" label="Collection of paired reads" help="FASTQ datasets" />
     </inputs>
     <outputs>
-        <data name="conseq" format="tabular" ext="conseq.csv" />
+      <data name="align" format="tabular" ext="align.csv" />
+      <data name="amino" format="tabular" ext="amino.csv" />
+      <data name="conseq" format="tabular" ext="conseq.csv" />
+      <data name="insert" format="tabular" ext="insert.csv" />
+      <data name="nuc" format="tabular" ext="nuc.csv" />
     </outputs>
     <tests>
         <test>