Mercurial > repos > dfornika > micall_lite

changeset 3:0244f4377440 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/tools/micall-lite commit c8241b460c9def5b434fa4350924599b09b17a69-dirty
author dfornika
date Fri, 20 Sep 2019 16:31:49 -0400
parents 9860e4ad1401
children 8ef8bed2483e
files micall-lite.xml
diffstat 1 files changed, 16 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/micall-lite.xml	Fri Sep 20 16:19:33 2019 -0400
+++ b/micall-lite.xml	Fri Sep 20 16:31:49 2019 -0400
@@ -17,14 +17,24 @@
         ]]>
     </command>
     <inputs>
-        <param format="fastq,fastq.gz" name="input_pair" type="data_collection" collection_type="paired" label="Collection of paired reads" help="FASTQ datasets" />
+        <param format="fastqsanger,fastqsanger.gz" name="input_pair" type="data_collection" collection_type="paired" label="Collection of paired reads" help="FASTQ datasets" />
     </inputs>
     <outputs>
-      <data name="align" format="tabular" ext="align.csv" />
-      <data name="amino" format="tabular" ext="amino.csv" />
-      <data name="conseq" format="tabular" ext="conseq.csv" />
-      <data name="insert" format="tabular" ext="insert.csv" />
-      <data name="nuc" format="tabular" ext="nuc.csv" />
+	<data name="align" format="tabular">
+	  <discover_datasets ext="align.csv" />
+	</data>
+	<data name="amino" format="tabular">
+	  <discover_datasets ext="amino.csv" />
+	</data>
+	<data name="conseq" format="tabular">
+	  <discover_datasets ext="conseq.csv" />
+	</data>
+	<data name="insert" format="tabular">
+	  <discover_datasets ext="insert.csv" />
+	</data>
+        <data name="nuc" format="tabular">
+	  <discover_datasets ext="nuc.csv" />
+	</data>
     </outputs>
     <tests>
         <test>