Mercurial > repos > dfornika > mentalist
changeset 7:460398e90fbf draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 57a0da85ffca7999bcd614004107d28a4099e566
| author | dfornika |
|---|---|
| date | Tue, 10 Oct 2017 19:16:45 -0400 |
| parents | a0c05da8a961 |
| children | b21885ec2a53 |
| files | data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py |
| diffstat | 2 files changed, 2 insertions(+), 2 deletions(-) [+] |
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--- a/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py Tue Oct 10 19:06:32 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py Tue Oct 10 19:16:45 2017 -0400 @@ -12,7 +12,7 @@ def mentalist_download_cgmlst( data_manager_dict, database_name, kmer_size, scheme, output, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ): - args = [ 'mentalist', 'download_pubmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o' output] + args = [ 'mentalist', 'download_cgmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o', output] proc = subprocess.Popen( args=args, shell=False, cwd=target_directory ) return_code = proc.wait() if return_code:
--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Tue Oct 10 19:06:32 2017 -0400 +++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py Tue Oct 10 19:16:45 2017 -0400 @@ -12,7 +12,7 @@ def mentalist_download_pubmlst( data_manager_dict, database_name, kmer_size, scheme, output, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ): - args = [ 'mentalist', 'download_pubmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o' output] + args = [ 'mentalist', 'download_pubmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o', output] proc = subprocess.Popen( args=args, shell=False, cwd=target_directory ) return_code = proc.wait() if return_code: