# HG changeset patch
# User dfornika
# Date 1507677405 14400
# Node ID 460398e90fbfebf56bf845fdd79924a7fcb1b7cd
# Parent  a0c05da8a96187edcb48af22e3cb9d285f4875d5
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 57a0da85ffca7999bcd614004107d28a4099e566

diff -r a0c05da8a961 -r 460398e90fbf data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py
--- a/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py	Tue Oct 10 19:06:32 2017 -0400
+++ b/data_managers/data_manager_mentalist_download_cgmlst/data_manager/mentalist_download_cgmlst.py	Tue Oct 10 19:16:45 2017 -0400
@@ -12,7 +12,7 @@
 
 
 def mentalist_download_cgmlst( data_manager_dict, database_name, kmer_size, scheme, output, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ):
-    args = [ 'mentalist', 'download_pubmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o' output]
+    args = [ 'mentalist', 'download_cgmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o', output]
     proc = subprocess.Popen( args=args, shell=False, cwd=target_directory )
     return_code = proc.wait()
     if return_code:
diff -r a0c05da8a961 -r 460398e90fbf data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py
--- a/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py	Tue Oct 10 19:06:32 2017 -0400
+++ b/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py	Tue Oct 10 19:16:45 2017 -0400
@@ -12,7 +12,7 @@
 
 
 def mentalist_download_pubmlst( data_manager_dict, database_name, kmer_size, scheme, output, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ):
-    args = [ 'mentalist', 'download_pubmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o' output]
+    args = [ 'mentalist', 'download_pubmlst', '--db', database_name, '-k', str(kmer_size), '-s', scheme, '-o', output]
     proc = subprocess.Popen( args=args, shell=False, cwd=target_directory )
     return_code = proc.wait()
     if return_code: