Mercurial > repos > dfornika > mentalist
changeset 31:038558f760a0 draft
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7439570c55ac2a400c96d05135ab86d499fd612a-dirty
| author | dfornika |
|---|---|
| date | Tue, 05 Dec 2017 13:55:37 -0500 |
| parents | d6619ce444f9 |
| children | c5658160ee70 |
| files | tools/mentalist_call/mentalist_call.xml |
| diffstat | 1 files changed, 0 insertions(+), 9 deletions(-) [+] |
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--- a/tools/mentalist_call/mentalist_call.xml Mon Dec 04 18:36:05 2017 -0500 +++ b/tools/mentalist_call/mentalist_call.xml Tue Dec 05 13:55:37 2017 -0500 @@ -7,9 +7,6 @@ call -o '$output_file' --db '$kmer_db.fields.path' - #if $discard_threshold - -t '$discard_threshold' - #end if #if $input_type.sPaired == "paired": -s $input_type.pInput1.name $input_type.pInput1 $input_type.pInput2 #elif $input_type.sPaired == "collections": @@ -35,12 +32,6 @@ <validator type="no_options" message="No MentaLiST databases are available" /> </options> </param> - <param name="discard_threshold" type="float" - label="Discard Threshold" help="A read of length L is discarded if it has at less than (L - k) * t hits to the same locus in the kmer database, where k is the kmer length. 0 <= t <= 1" - value="0.3" min="0" max="1" /> - <param name="skip_length" type="integer" - label="Skip Length" help="Skip length between consecutive k-mers." - value="1" min="1" max="32" /> </inputs> <outputs> <data name="output_file" format="tabular"/>