# HG changeset patch
# User dfornika
# Date 1512500137 18000
# Node ID 038558f760a0eb8db8f08e8f314852fdc4c2d9db
# Parent  d6619ce444f9c25fc8527a0cb8457074cdde3a4d
planemo upload for repository https://github.com/WGS-TB/MentaLiST/tree/master/galaxy commit 7439570c55ac2a400c96d05135ab86d499fd612a-dirty

diff -r d6619ce444f9 -r 038558f760a0 tools/mentalist_call/mentalist_call.xml
--- a/tools/mentalist_call/mentalist_call.xml	Mon Dec 04 18:36:05 2017 -0500
+++ b/tools/mentalist_call/mentalist_call.xml	Tue Dec 05 13:55:37 2017 -0500
@@ -7,9 +7,6 @@
     call
     -o '$output_file'
     --db '$kmer_db.fields.path'
-    #if $discard_threshold
-        -t '$discard_threshold'
-    #end if
     #if $input_type.sPaired == "paired":
        -s $input_type.pInput1.name $input_type.pInput1 $input_type.pInput2
     #elif $input_type.sPaired == "collections":
@@ -35,12 +32,6 @@
 	<validator type="no_options" message="No MentaLiST databases are available" />
       </options>
     </param>
-    <param name="discard_threshold" type="float"
-	   label="Discard Threshold" help="A read of length L is discarded if it has at less than (L - k) * t hits to the same locus in the kmer database, where k is the kmer length. 0 &lt;= t &lt;= 1"
-	   value="0.3" min="0" max="1" />
-    <param name="skip_length" type="integer"
-	   label="Skip Length" help="Skip length between consecutive k-mers."
-	   value="1" min="1" max="32" />
   </inputs>
   <outputs>
     <data name="output_file" format="tabular"/>