Mercurial > repos > dfornika > data_manager_build_kma_index

changeset 4:a34b2582400f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kma_index/ commit d1bac4e17d033729c1b87f97d36e44fe84059617-dirty
author dfornika
date Thu, 03 Oct 2019 02:33:47 -0400
parents a2d161a09425
children 52b5eab2bf08
files data_manager/kma_build_index.py
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kma_build_index.py	Thu Oct 03 02:29:22 2019 -0400
+++ b/data_manager/kma_build_index.py	Thu Oct 03 02:33:47 2019 -0400
@@ -21,7 +21,8 @@
         '-ML', str(kma_index_args["ML"]),
         '-ht', str(kma_index_args["ht"]),
         '-hq', str(kma_index_args["hq"]),
-        " ".join(kma_index_args["fasta"]),
+        '-o', "index",
+        '-i', " ".join(kma_index_args["fasta"]),
     ]
 
     subprocess.check_call(['kma'] + ['index'] + args, cwd=target_directory)
@@ -32,7 +33,7 @@
                 {
                     "value": uuid.uuid4(),
                     "name": index_name,
-                    "path": "seq",
+                    "path": "index",
                 }
             ]
         }