# HG changeset patch
# User dfornika
# Date 1570084427 14400
# Node ID a34b2582400fb63190c5a1e3b478505786643b2e
# Parent  a2d161a0942590eb14aecea018bc6bc3603578e5
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kma_index/ commit d1bac4e17d033729c1b87f97d36e44fe84059617-dirty

diff -r a2d161a09425 -r a34b2582400f data_manager/kma_build_index.py
--- a/data_manager/kma_build_index.py	Thu Oct 03 02:29:22 2019 -0400
+++ b/data_manager/kma_build_index.py	Thu Oct 03 02:33:47 2019 -0400
@@ -21,7 +21,8 @@
         '-ML', str(kma_index_args["ML"]),
         '-ht', str(kma_index_args["ht"]),
         '-hq', str(kma_index_args["hq"]),
-        " ".join(kma_index_args["fasta"]),
+        '-o', "index",
+        '-i', " ".join(kma_index_args["fasta"]),
     ]
 
     subprocess.check_call(['kma'] + ['index'] + args, cwd=target_directory)
@@ -32,7 +33,7 @@
                 {
                     "value": uuid.uuid4(),
                     "name": index_name,
-                    "path": "seq",
+                    "path": "index",
                 }
             ]
         }