Mercurial > repos > dfornika > data_manager_build_kma_index

changeset 3:a2d161a09425 draft

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planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kma_index/ commit 53a42565eaad1ef0da3e47329dcc93d8841f780e-dirty
author dfornika
date Thu, 03 Oct 2019 02:29:22 -0400
parents 3dd609434a7e
children a34b2582400f
files data_manager/kma_build_index.py
diffstat 1 files changed, 7 insertions(+), 7 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/kma_build_index.py	Thu Oct 03 02:24:56 2019 -0400
+++ b/data_manager/kma_build_index.py	Thu Oct 03 02:29:22 2019 -0400
@@ -15,13 +15,13 @@
 def kma_build_index(kma_index_args, index_name, target_directory, data_table_name=DATA_TABLE_NAME):
 
     args = [
-        '--k', str(kma_index_args["k"]),
-        '--k_t', str(kma_index_args["k_t"]),
-        '--k_i', str(kma_index_args["k_i"]),
-        '--ML', str(kma_index_args["ML"]),
-        '--ht', str(kma_index_args["ht"]),
-        '--hq', str(kma_index_args["hq"]),
-        str(kma_index_args["fasta"]),
+        '-k', str(kma_index_args["k"]),
+        '-k_t', str(kma_index_args["k_t"]),
+        '-k_i', str(kma_index_args["k_i"]),
+        '-ML', str(kma_index_args["ML"]),
+        '-ht', str(kma_index_args["ht"]),
+        '-hq', str(kma_index_args["hq"]),
+        " ".join(kma_index_args["fasta"]),
     ]
 
     subprocess.check_call(['kma'] + ['index'] + args, cwd=target_directory)