view chewbbaca_schemaevaluator.xml @ 2:99cdfc72f05d draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 071e014d347109e5c18cc50595498d3d43ef0323-dirty"
author dfornika
date Tue, 02 Jun 2020 20:34:04 +0000
parents 5037f1f7423c
children
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<tool id="chewbbaca_schemaevaluator" name="chewBBACA SchemaEvaluator" version="@TOOL_VERSION@+galaxy0">
    <description>BSR-Based Allele Calling Algorithm</description>
    <requirements>
        <requirement type="package" version="@TOOL_VERSION@">chewbbaca</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        chewBBACA.py SchemaEvaluator
          --cpu \${GALAXY_SLOTS:-1}
          -i '${schema}'
          -t '${threshold}'
        ]]>
    </command>
    <inputs>
        
    </inputs>

    <!-- define outputs -->
    <outputs>
        <data format="tabular" name="statistics" label="${tool.name}: on ${on_string}: Statistics" />
        <data format="tabular" name="contigs_info" label="${tool.name}: on ${on_string}: Contigs Info" />
        <data format="tabular" name="alleles" label="${tool.name}: on ${on_string}: Alleles"  />
        <data format="txt" name="log" label="${tool.name}: on ${on_string}: Log" />
        <data format="tabular" name="repeated_loci" label="${tool.name}: on ${on_string}: Repeated Loci" />
    </outputs>
    <tests>
        
    </tests>
    <help><![CDATA[
    ]]>
    </help>
    <expand macro="citations"/>
</tool>