Mercurial > repos > dfornika > chewbbaca_schemaevaluator

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 071e014d347109e5c18cc50595498d3d43ef0323-dirty"
author dfornika
date Tue, 02 Jun 2020 20:34:04 +0000
parents 5037f1f7423c
children
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6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
dfornika
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1 <tool id="chewbbaca_schemaevaluator" name="chewBBACA SchemaEvaluator" version="@TOOL_VERSION@+galaxy0">
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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2 <description>BSR-Based Allele Calling Algorithm</description>
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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3 <requirements>
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4 <requirement type="package" version="@TOOL_VERSION@">chewbbaca</requirement>
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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5 </requirements>
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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6 <command detect_errors="exit_code"><![CDATA[
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7 chewBBACA.py SchemaEvaluator
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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8 --cpu \${GALAXY_SLOTS:-1}
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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9 -i '${schema}'
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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10 -t '${threshold}'
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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11 ]]>
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12 </command>
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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13 <inputs>
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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15 </inputs>
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16
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17 <!-- define outputs -->
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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18 <outputs>
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19 <data format="tabular" name="statistics" label="${tool.name}: on ${on_string}: Statistics" />
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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20 <data format="tabular" name="contigs_info" label="${tool.name}: on ${on_string}: Contigs Info" />
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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21 <data format="tabular" name="alleles" label="${tool.name}: on ${on_string}: Alleles" />
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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22 <data format="txt" name="log" label="${tool.name}: on ${on_string}: Log" />
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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23 <data format="tabular" name="repeated_loci" label="${tool.name}: on ${on_string}: Repeated Loci" />
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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24 </outputs>
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25 <tests>
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26
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27 </tests>
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28 <help><![CDATA[
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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29 ]]>
6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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30 </help>
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5037f1f7423c "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chewbbaca commit 90d84ed39bfd0d34e10cec9f417953042404648a-dirty"
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31 <expand macro="citations"/>
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6053ca7c24f3 "planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/blob/master/tools/chewbbaca commit 66a9f18802686a105b392e73e82c0078d0cdf2a4"
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32 </tool>