Mercurial > repos > dfornika > assign_clades

annotate assign_clades.xml @ 2:4db5ff896984 draft

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planemo upload for repository https://github.com/dfornika/clade_assignment commit 37782cdec2170cd7256885061f811e506bde502a-dirty
author dfornika
date Wed, 25 Oct 2017 21:09:09 -0400
parents 5d4104c3481a
children e269f6acc156
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2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
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1 <tool id="assign_clades" name="Assign Clades" version="0.1.0">
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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2 <requirements>
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5d4104c3481a planemo upload for repository https://github.com/dfornika/clade_assignment commit f6acaafa8f35dd4e410954192f5ff4c2e80c4399-dirty
dfornika
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3 <requirement type="package">package_biopython_1_61</requirement>
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2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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4 </requirements>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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5 <command detect_errors="exit_code"><![CDATA[
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
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6 python
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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7 $__tool_directory__/assign_clades.py
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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8 '$input_fasta'
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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9 '$clade_definitions'
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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10 '$output_file'
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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11 ]]></command>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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12 <inputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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13 <param name="input_fasta" format="fasta" type="data" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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14 <param name="clade_definitions" format="csv" type="data" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
dfornika
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15 </inputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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16 <outputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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17 <data name="output_file" format="fasta"/>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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18 </outputs>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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19 <tests>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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20 <test>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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21 <param name="input_fasta" value="input_fasta.fasta" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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22 <param name="clade_definitions" value="clades.csv" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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23 <output name="output_file" value="output.fasta" />
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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24 </test>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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25 </tests>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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26 <help><![CDATA[
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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27 ]]></help>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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28 <citations>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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29 </citations>
2e262bbd193f planemo upload for repository https://github.com/dfornika/clade_assignment commit 03a6fa631a506f446f52a7d9bfba649edac8a212
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30 </tool>