Mercurial > repos > devteam > kraken_report

annotate macros.xml @ 7:1c163820e346 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
author iuc
date Mon, 07 Aug 2017 17:28:06 -0400
parents 00d6d8350905
children 196f2cf1f0a1
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
1 <?xml version="1.0"?>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
2 <macros>
7
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents: 6
diff changeset
3 <token name="@WRAPPER_VERSION@">1.2.3</token>
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
4 <xml name="requirements">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
5 <requirements>
5
e9e42bf5c6a8 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit 3abfc7eb2999fa588862b84c453012c811fa8350
devteam
parents: 1
diff changeset
6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement>
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
7 </requirements>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
8 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
9 <xml name="version_command">
7
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents: 6
diff changeset
10 <version_command><![CDATA[
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents: 6
diff changeset
11 export LC_ALL=C && kraken --version
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents: 6
diff changeset
12 ]]></version_command>
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
13 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
14 <xml name="input_database">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
15 <param label="Select a Kraken database" name="kraken_database" type="select">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
16 <options from_data_table="kraken_databases">
7
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents: 6
diff changeset
17 <validator message="No Kraken database is available" type="no_options" />
0
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
18 </options>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
19 </param>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
20 </xml>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
21 <xml name="citations">
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
22 <citations>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
24 </citations>
8bbf903bf0cb Uploaded
devteam
parents:
diff changeset
25 </xml>
1
bb3d55e8ef3d planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
devteam
parents: 0
diff changeset
26 <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token>
bb3d55e8ef3d planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
devteam
parents: 0
diff changeset
27 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token>
7
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
parents: 6
diff changeset
28 </macros>