Mercurial > repos > devteam > kraken_report

diff macros.xml @ 1:bb3d55e8ef3d draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit cb1743eafd4ca98be0148d557770ef8635cc8d4c-dirty
author devteam
date Tue, 19 May 2015 16:42:26 -0400
parents 8bbf903bf0cb
children e9e42bf5c6a8
line wrap: on
line diff
--- a/macros.xml	Wed Apr 22 13:04:06 2015 -0400
+++ b/macros.xml	Tue May 19 16:42:26 2015 -0400
@@ -25,5 +25,6 @@
             <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
         </citations>
     </xml>
-    <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.path}/${kraken_database.fields.name}</token>
+    <token name="@INPUT_DATABASE@">--db ${kraken_database.fields.name}</token>
+    <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH="${kraken_database.fields.path}"</token>
 </macros>
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