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annotate macros.xml @ 8:196f2cf1f0a1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit 659d4506dad485d853a91a6a6f8bed1e3c56e204
author iuc
date Thu, 13 Sep 2018 09:44:00 -0400
parents 1c163820e346
children 8ddbdc9cdc57
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1 <?xml version="1.0"?>
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2 <macros>
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196f2cf1f0a1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit 659d4506dad485d853a91a6a6f8bed1e3c56e204
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3 <token name="@WRAPPER_VERSION@">1.2.4</token>
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4 <xml name="requirements">
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5 <requirements>
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e9e42bf5c6a8 planemo upload for repository https://github.com/galaxyproject/tools-devteam/blob/master/tool_collections/kraken/kraken_report/ commit 3abfc7eb2999fa588862b84c453012c811fa8350
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6 <requirement type="package" version="0.10.6_eaf8fb68">kraken</requirement>
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7 </requirements>
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8 </xml>
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9 <xml name="version_command">
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1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
iuc
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10 <version_command><![CDATA[
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
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11 export LC_ALL=C && kraken --version
1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
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12 ]]></version_command>
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13 </xml>
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14 <xml name="input_database">
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15 <param label="Select a Kraken database" name="kraken_database" type="select">
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16 <options from_data_table="kraken_databases">
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1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
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17 <validator message="No Kraken database is available" type="no_options" />
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18 </options>
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19 </param>
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20 </xml>
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21 <xml name="citations">
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22 <citations>
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23 <citation type="doi">10.1186/gb-2014-15-3-r46</citation>
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24 </citations>
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25 </xml>
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196f2cf1f0a1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit 659d4506dad485d853a91a6a6f8bed1e3c56e204
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26 <token name="@INPUT_DATABASE@">--db '${kraken_database.fields.name}'</token>
196f2cf1f0a1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit 659d4506dad485d853a91a6a6f8bed1e3c56e204
iuc
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27 <token name="@SET_DATABASE_PATH@">export KRAKEN_DB_PATH='${kraken_database.fields.path}'</token>
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1c163820e346 planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tool_collections/kraken/kraken_report/ commit e8fc7c9dad5f583ad6763ecb9bd8c924832abacd
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28 </macros>