Mercurial > repos > devteam > data_manager_fetch_genome_dbkeys_all_fasta
annotate data_manager_conf.xml @ 13:cd0196536dfd draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
| author | iuc |
|---|---|
| date | Thu, 05 Dec 2024 06:47:24 +0000 |
| parents | c89e003f518a |
| children |
| rev | line source |
|---|---|
| 0 | 1 <?xml version="1.0"?> |
| 2 <data_managers> | |
| 3 | |
| 4 <data_manager tool_file="data_manager/data_manager_fetch_genome_all_fasta_dbkeys.xml" id="fetch_genome_all_fasta_dbkeys"> | |
| 5 <data_table name="all_fasta"> | |
| 6 <output> | |
| 7 <column name="value" /> | |
| 8 <column name="dbkey" /> | |
| 9 <column name="name" /> | |
| 10 <column name="path" output_ref="out_file" > | |
| 11 <move type="file"> | |
| 12 <source>${path}</source> | |
|
13
cd0196536dfd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents:
0
diff
changeset
|
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/seq/${path}</target> |
| 0 | 14 </move> |
|
13
cd0196536dfd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents:
0
diff
changeset
|
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/seq/${path}</value_translation> |
| 0 | 16 <value_translation type="function">abspath</value_translation> |
| 17 </column> | |
| 18 </output> | |
| 19 </data_table> | |
| 20 <data_table name="__dbkeys__"> | |
| 21 <output> | |
| 22 <column name="value" /> | |
| 23 <column name="name" /> | |
| 24 <column name="len_path" output_ref="out_file" > | |
| 25 <move type="file"> | |
| 26 <source>${len_path}</source> | |
|
13
cd0196536dfd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents:
0
diff
changeset
|
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/len/${len_path}</target> |
| 0 | 28 </move> |
|
13
cd0196536dfd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
parents:
0
diff
changeset
|
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/len/${len_path}</value_translation> |
| 0 | 30 <value_translation type="function">abspath</value_translation> |
| 31 </column> | |
| 32 </output> | |
| 33 </data_table> | |
| 34 </data_manager> | |
| 35 | |
| 36 </data_managers> |