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comparison data_manager_conf.xml @ 13:cd0196536dfd draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_genome_dbkeys_all_fasta commit 57d05675396f0b44265fb4dbc8f9f891c6073219
author iuc
date Thu, 05 Dec 2024 06:47:24 +0000
parents c89e003f518a
children
comparison
equal deleted inserted replaced
12:545a0f7663ef 13:cd0196536dfd
8 <column name="dbkey" /> 8 <column name="dbkey" />
9 <column name="name" /> 9 <column name="name" />
10 <column name="path" output_ref="out_file" > 10 <column name="path" output_ref="out_file" >
11 <move type="file"> 11 <move type="file">
12 <source>${path}</source> 12 <source>${path}</source>
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/seq/${path}</target> 13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/seq/${path}</target>
14 </move> 14 </move>
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/seq/${path}</value_translation> 15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/seq/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation> 16 <value_translation type="function">abspath</value_translation>
17 </column> 17 </column>
18 </output> 18 </output>
19 </data_table> 19 </data_table>
20 <data_table name="__dbkeys__"> 20 <data_table name="__dbkeys__">
22 <column name="value" /> 22 <column name="value" />
23 <column name="name" /> 23 <column name="name" />
24 <column name="len_path" output_ref="out_file" > 24 <column name="len_path" output_ref="out_file" >
25 <move type="file"> 25 <move type="file">
26 <source>${len_path}</source> 26 <source>${len_path}</source>
27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${value}/len/${len_path}</target> 27 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/len/${len_path}</target>
28 </move> 28 </move>
29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${value}/len/${len_path}</value_translation> 29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/len/${len_path}</value_translation>
30 <value_translation type="function">abspath</value_translation> 30 <value_translation type="function">abspath</value_translation>
31 </column> 31 </column>
32 </output> 32 </output>
33 </data_table> 33 </data_table>
34 </data_manager> 34 </data_manager>