Mercurial > repos > davidvanzessen > vidjil_with_browser

annotate germline/TRAJ.fa @ 7:e55dfd9a8c00 draft default tip

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Uploaded
author davidvanzessen
date Thu, 12 Feb 2015 10:47:15 -0500
parents fe4001bdf8d4
children
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fe4001bdf8d4 Uploaded
davidvanzessen
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1 >X02884|TRAJ1*01|Homo sapiens|ORF|J-REGION|2363..2424|62 nt|2| | | | |62+0=62| |rev-compl|
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2 gtatgaaagtattacctcccagttgcaatttggcaaaggaaccagagtttccacttctcc
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3 cc
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4 >M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| |rev-compl|
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5 atactcacgggaggaggaaacaaactcacctttgggacaggcactcagctaaaagtggaa
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6 ctca
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7 >M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| |rev-compl|
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8 tgaattcaggatacagcaccctcacctttgggaaggggactatgcttctagtctctccag
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9 >X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| |rev-compl|
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10 ggatggatagcagctataaattgatcttcgggagtgggaccagactgctggtcaggcctg
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11 >M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| |rev-compl|
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12 tgaattctgggggttaccagaaagttacctttggaattggaacaaagctccaagtcatcc
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13 caa
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14 >AC023226|TRAJ13*02|Homo sapiens|F|J-REGION|51292..51354|63 nt|3| | | | |63+0=63| | |
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15 tgaattctgggggttaccagaaagttacctttggaactggaacaaagctccaagtcatcc
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16 caa
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17 >M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| |rev-compl|
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18 atttatagcacattcatctttgggagtgggacaagattatcagtaaaacctg
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19 >X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| |rev-compl|
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20 ccaaccaggcaggaactgctctgatctttgggaagggaaccaccttatcagtgagttcca
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21 >M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| |rev-compl|
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22 ccaaccaggcaggaactgctctgatctttgggaagggaacccacctatcagtgagttcca
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23 >M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| |rev-compl|
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24 ggttttcagatggccagaagctgctctttgcaaggggaaccatgttaaaggtggatctta
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25 >X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| |rev-compl|
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26 tgatcaaagctgcaggcaacaagctaacttttggaggaggaaccagggtgctagttaaac
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27 caa
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28 >M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| |rev-compl|
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29 ccgacagaggctcaaccctggggaggctatactttggaagaggaactcagttgactgtct
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30 ggcctg
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31 >M94081|TRAJ19*01|Homo sapiens|ORF|J-REGION|65489..65548|60 nt|3| | | | |60+0=60| |rev-compl|
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32 gctatcaaagattttacaatttcacctttggaaagggatccaaacataatgtcactccaa
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33 >X02884|TRAJ2*01|Homo sapiens|ORF|J-REGION|1397..1462|66 nt|3| | | | |66+0=66| |rev-compl|
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34 tgaatactggaggaacaattgataaactcacatttgggaaagggacccatgtattcatta
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35 tatctg
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36 >M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| |rev-compl|
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37 gttctaacgactacaagctcagctttggagccggaaccacagtaactgtaagagcaa
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38 >M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| |rev-compl|
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39 tacaacttcaacaaattttactttggatctgggaccaaactcaatgtaaaaccaa
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40 >X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| |rev-compl|
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41 tttcttctggttctgcaaggcaactgacctttggatctgggacacaattgactgttttac
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42 ctg
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43 >M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| |rev-compl|
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44 tgatttataaccagggaggaaagcttatcttcggacagggaacggagttatctgtgaaac
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45 cca
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46 >X58763|TRAJ23*02|Homo sapiens|(F)|J-REGION|61..123|63 nt|3| | | | |63+0=63| |rev-compl|
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47 tgatttataaccagggaggaaagcttatcttcggacagggaacggagctatctgtgaaac
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48 cca
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49 >X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| |rev-compl|
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50 tgacaactgacagctgggggaaattcgagtttggagcagggacccaggttgtggtcaccc
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51 cag
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52 >M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| |rev-compl|
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53 tgacaactgacagctgggggaaattgcagtttggagcagggacccaggttgtggtcaccc
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54 cag
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55 >X02888|TRAJ25*01|Homo sapiens|ORF|J-REGION|35..94|60 nt|3| | | | |60+0=60| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
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56 cagaaggacaaggcttctcctttatctttgggaaggggacaaggctgcttgtcaagccaa
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57 >M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| |rev-compl|
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58 gggataactatggtcagaattttgtctttggtcccggaaccagattgtccgtgctgccct
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59 >M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| |rev-compl|
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60 taacaccaatgcaggcaaatcaacctttggggatgggactacgctcactgtgaagccaa
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61 >M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| |rev-compl|
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62 catactctggggctgggagttaccaactcactttcgggaaggggaccaaactctcggtca
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63 taccaa
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64 >M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| |rev-compl|
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65 ggaattcaggaaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaa
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66 >X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| |rev-compl|
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67 ggggtacagcagtgcttccaagataatctttggatcagggaccagactcagcatccggcc
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68 aa
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69 >M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| |rev-compl|
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70 tgaacagagatgacaagatcatctttggaaaagggacacgacttcatattctcccca
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71 >M14905|TRAJ31*01|Homo sapiens|F|J-REGION|77..132|56 nt|2| | | | |56+0=56| |rev-compl|
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72 gaataacaatgccagactcatgtttggagatggaactcagctggtggtgaagccca
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73 >M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| |rev-compl|
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74 tgaattatggcggtgctacaaacaagctcatctttggaactggcactctgcttgctgtcc
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75 agccaa
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76 >AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299|60 nt|3| |1| | |60+0=60|partial in 5'|rev-compl|
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77 atggtggtgctacaaacaagctcatctttggaactggcactctgcttgctgtccagccaa
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78 >M94081|TRAJ33*01|Homo sapiens|F|J-REGION|48843..48899|57 nt|3| | | | |57+0=57| |rev-compl|
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79 tggatagcaactatcagttaatctggggcgctgggaccaagctaattataaagccag
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80 >M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| |rev-compl|
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81 tcttataacaccgacaagctcatctttgggactgggaccagattacaagtctttccaa
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82 >M94081|TRAJ35*01|Homo sapiens|ORF|J-REGION|46885..46943|59 nt|2| | | | |59+0=59| |rev-compl|
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83 gataggctttgggaatgtgctgcattgcgggtccggcactcaagtgattgttttaccac
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84 >M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| |rev-compl|
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85 tcaaactggggcaaacaacctcttctttgggactggaacgagactcaccgttattccct
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86 >M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| |rev-compl|
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87 tggctctggcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc
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88 ag
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89 >AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397|62 nt|2| |1| | |62+0=62| |rev-compl|
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90 tggctctagcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc
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91 ag
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92 >M94081|TRAJ38*01|Homo sapiens|F|J-REGION|42473..42534|62 nt|2| | | | |62+0=62| |rev-compl|
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93 taatgctggcaacaaccgtaagctgatttggggattgggaacaagcctggcagtaaatcc
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94 ga
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95 >M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| |rev-compl|
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96 tgaataataatgcaggcaacatgctcacctttggagggggaacaaggttaatggtcaaac
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97 ccc
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98 >M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| |rev-compl|
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99 tgttttctggtggctacaataagctgatttttggagcagggaccaggctggctgtacacc
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100 cat
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101 >M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| |rev-compl|
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102 actacctcaggaacctacaaatacatctttggaacaggcaccaggctgaaggttttagca
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103 a
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104 >M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| |rev-compl|
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105 gaactcaaattccgggtatgcactcaacttcggcaaaggcacctcgctgttggtcacacc
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106 cc
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107 >M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| |rev-compl|
fe4001bdf8d4 Uploaded
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108 tgaattatggaggaagccaaggaaatctcatctttggaaaaggcactaaactctctgtta
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109 aaccaa
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110 >M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| |rev-compl|
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111 acaataacaatgacatgcgctttggagcagggaccagactgacagtaaaaccaa
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112 >M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| |rev-compl|
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113 taaataccggcactgccagtaaactcacctttgggactggaacaagacttcaggtcacgc
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114 tcg
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115 >M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| |rev-compl|
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116 tgtattcaggaggaggtgctgacggactcacctttggcaaagggactcatctaatcatcc
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117 agccct
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118 >M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| |rev-compl|
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119 agaagaaaagcagcggagacaagctgacttttgggaccgggactcgtttagcagttaggc
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120 cca
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121 >M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| |rev-compl|
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122 tggaatatggaaacaaactggtctttggcgcaggaaccattctgagagtcaagtcct
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123 >AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368|57 nt|3| |1| | |57+0=57| |rev-compl|
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124 tggaatatggaaacaagctggtctttggcgcaggaaccattctgagagtcaagtcct
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125 >M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| |rev-compl|
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parents:
diff changeset
126 tatctaactttggaaatgagaaattaacctttgggactggaacaagactcaccatcatac
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
127 cca
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
128 >M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
129 gaacaccggtaaccagttctattttgggacagggacaagtttgacggtcattccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
130 >M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
131 tggacacgggcaggagagcacttacttttgggagtggaacaagactccaagtgcaaccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
132 >M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
133 tgaaaacctcctacgacaaggtgatatttgggccagggacaagcttatcagtcattccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
134 >M94081|TRAJ51*01|Homo sapiens|P|J-REGION|27429..27491|63 nt|3| | | | |63+0=63| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
135 agatgcgtgacagctatgagaagctgatatttggaaaggagacatgactaactgtgaagc
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
136 caa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
137 >M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
138 ctaatgctggtggtactagctatggaaagctgacatttggacaagggaccatcttgactg
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
139 tccatccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
140 >M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
141 agaatagtggaggtagcaactataaactgacatttggaaaaggaactctcttaaccgtga
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
142 atccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
143 >M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
144 taattcagggagcccagaagctggtatttggccaaggaaccaggctgactatcaacccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
145 >M94081|TRAJ55*01|Homo sapiens|P|J-REGION|21944..22000|57 nt|3| | | | |57+0=57| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
146 acaagtgctggtaatgctcctgttggggaaaggggatgagtacaaaaataaatccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
147 >M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
148 ttatactggagccaatagtaagctgacatttggaaaaggaataactctgagtgttagacc
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
149 ag
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
150 >M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
151 taactcagggcggatctgaaaagctggtctttggaaagggaacgaaactgacagtaaacc
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
152 cat
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
153 >M94081|TRAJ58*01|Homo sapiens|ORF|J-REGION|17954..18016|63 nt|3| | | | |63+0=63| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
154 tttaagaaaccagtggctctaggttgacctttggggaaggaacacagctcacagtgaatc
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
155 ctg
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
156 >M94081|TRAJ59*01|Homo sapiens|ORF|J-REGION|16801..16854|54 nt|3| | | | |54+0=54| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
157 ggaaggaaggaaacaggaaatttacatttggaatggggacgcaagtgagagtga
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
158 >M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
159 tgcatcaggaggaagctacatacctacatttggaagaggaaccagccttattgttcatcc
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
160 gt
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
161 >M94081|TRAJ60*01|Homo sapiens|P|J-REGION|16554..16610|57 nt|3| | | | |57+0=57| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
162 tgaagatcacctagatgctcaactttgggaaggggactgagttaattgtgagcctgg
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
163 >M94081|TRAJ61*01|Homo sapiens|ORF|J-REGION|15564..15623|60 nt|3| | | | |60+0=60| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
164 ggtaccgggttaataggaaactgacatttggagccaacactagaggaatcatgaaactca
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
165 >M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
166 tgactatgggaacaacagactcgcttttgggaaggggaaccaagtggtggtcataccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
167 >M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
168 tgaacacaggctttcagaaacttgtatttggaactggcacccgacttctggtcagtccaa
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
169 >M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| |rev-compl|
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
170 ggaaatactggaggcttcaaaactatctttggagcaggaacaagactatttgttaaagca
fe4001bdf8d4 Uploaded
davidvanzessen
parents:
diff changeset
171 a