--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/germline/TRAJ.fa	Tue Dec 09 03:55:01 2014 -0500
@@ -0,0 +1,171 @@
+>X02884|TRAJ1*01|Homo sapiens|ORF|J-REGION|2363..2424|62 nt|2| | | | |62+0=62| |rev-compl|
+gtatgaaagtattacctcccagttgcaatttggcaaaggaaccagagtttccacttctcc
+cc
+>M94081|TRAJ10*01|Homo sapiens|F|J-REGION|73699..73762|64 nt|1| | | | |64+0=64| |rev-compl|
+atactcacgggaggaggaaacaaactcacctttgggacaggcactcagctaaaagtggaa
+ctca
+>M94081|TRAJ11*01|Homo sapiens|F|J-REGION|72706..72765|60 nt|3| | | | |60+0=60| |rev-compl|
+tgaattcaggatacagcaccctcacctttgggaaggggactatgcttctagtctctccag
+>X02885|TRAJ12*01|Homo sapiens|F|J-REGION|53..112|60 nt|3| | | | |60+0=60| |rev-compl|
+ggatggatagcagctataaattgatcttcgggagtgggaccagactgctggtcaggcctg
+>M94081|TRAJ13*01|Homo sapiens|F|J-REGION|71280..71342|63 nt|3| | | | |63+0=63| |rev-compl|
+tgaattctgggggttaccagaaagttacctttggaattggaacaaagctccaagtcatcc
+caa
+>AC023226|TRAJ13*02|Homo sapiens|F|J-REGION|51292..51354|63 nt|3| | | | |63+0=63| | |
+tgaattctgggggttaccagaaagttacctttggaactggaacaaagctccaagtcatcc
+caa
+>M94081|TRAJ14*01|Homo sapiens|F|J-REGION|70532..70583|52 nt|1| | | | |52+0=52| |rev-compl|
+atttatagcacattcatctttgggagtgggacaagattatcagtaaaacctg
+>X05775|TRAJ15*01|Homo sapiens|F|J-REGION|80..139|60 nt|3| | | | |60+0=60| |rev-compl|
+ccaaccaggcaggaactgctctgatctttgggaagggaaccaccttatcagtgagttcca
+>M94081|TRAJ15*02|Homo sapiens|F|J-REGION|69836..69895|60 nt|3| | | | |60+0=60| |rev-compl|
+ccaaccaggcaggaactgctctgatctttgggaagggaacccacctatcagtgagttcca
+>M94081|TRAJ16*01|Homo sapiens|F|J-REGION|68743..68802|60 nt|3| | | | |60+0=60| |rev-compl|
+ggttttcagatggccagaagctgctctttgcaaggggaaccatgttaaaggtggatctta
+>X05773|TRAJ17*01|Homo sapiens|F|J-REGION|173..235|63 nt|3| | | | |63+0=63| |rev-compl|
+tgatcaaagctgcaggcaacaagctaacttttggaggaggaaccagggtgctagttaaac
+caa
+>M94081|TRAJ18*01|Homo sapiens|F|J-REGION|65876..65941|66 nt|3| | | | |66+0=66| |rev-compl|
+ccgacagaggctcaaccctggggaggctatactttggaagaggaactcagttgactgtct
+ggcctg
+>M94081|TRAJ19*01|Homo sapiens|ORF|J-REGION|65489..65548|60 nt|3| | | | |60+0=60| |rev-compl|
+gctatcaaagattttacaatttcacctttggaaagggatccaaacataatgtcactccaa
+>X02884|TRAJ2*01|Homo sapiens|ORF|J-REGION|1397..1462|66 nt|3| | | | |66+0=66| |rev-compl|
+tgaatactggaggaacaattgataaactcacatttgggaaagggacccatgtattcatta
+tatctg
+>M94081|TRAJ20*01|Homo sapiens|F|J-REGION|64552..64608|57 nt|3| | | | |57+0=57| |rev-compl|
+gttctaacgactacaagctcagctttggagccggaaccacagtaactgtaagagcaa
+>M94081|TRAJ21*01|Homo sapiens|F|J-REGION|63829..63883|55 nt|1| | | | |55+0=55| |rev-compl|
+tacaacttcaacaaattttactttggatctgggaccaaactcaatgtaaaaccaa
+>X02886|TRAJ22*01|Homo sapiens|F|J-REGION|405..467|63 nt|3| | | | |63+0=63| |rev-compl|
+tttcttctggttctgcaaggcaactgacctttggatctgggacacaattgactgttttac
+ctg
+>M94081|TRAJ23*01|Homo sapiens|F|J-REGION|60650..60712|63 nt|3| | | | |63+0=63| |rev-compl|
+tgatttataaccagggaggaaagcttatcttcggacagggaacggagttatctgtgaaac
+cca
+>X58763|TRAJ23*02|Homo sapiens|(F)|J-REGION|61..123|63 nt|3| | | | |63+0=63| |rev-compl|
+tgatttataaccagggaggaaagcttatcttcggacagggaacggagctatctgtgaaac
+cca
+>X02887|TRAJ24*01|Homo sapiens|F|J-REGION|124..186|63 nt|3| | | | |63+0=63| |rev-compl|
+tgacaactgacagctgggggaaattcgagtttggagcagggacccaggttgtggtcaccc
+cag
+>M94081|TRAJ24*02|Homo sapiens|F|J-REGION|60203..60265|63 nt|3| | | | |63+0=63| |rev-compl|
+tgacaactgacagctgggggaaattgcagtttggagcagggacccaggttgtggtcaccc
+cag
+>X02888|TRAJ25*01|Homo sapiens|ORF|J-REGION|35..94|60 nt|3| | | | |60+0=60| |rev-compl|
+cagaaggacaaggcttctcctttatctttgggaaggggacaaggctgcttgtcaagccaa
+>M94081|TRAJ26*01|Homo sapiens|F|J-REGION|58680..58739|60 nt|3| | | | |60+0=60| |rev-compl|
+gggataactatggtcagaattttgtctttggtcccggaaccagattgtccgtgctgccct
+>M94081|TRAJ27*01|Homo sapiens|F|J-REGION|56507..56565|59 nt|2| | | | |59+0=59| |rev-compl|
+taacaccaatgcaggcaaatcaacctttggggatgggactacgctcactgtgaagccaa
+>M94081|TRAJ28*01|Homo sapiens|F|J-REGION|55857..55922|66 nt|3| | | | |66+0=66| |rev-compl|
+catactctggggctgggagttaccaactcactttcgggaaggggaccaaactctcggtca
+taccaa
+>M94081|TRAJ29*01|Homo sapiens|F|J-REGION|54177..54236|60 nt|3| | | | |60+0=60| |rev-compl|
+ggaattcaggaaacacacctcttgtctttggaaagggcacaagactttctgtgattgcaa
+>X02884|TRAJ3*01|Homo sapiens|F|J-REGION|504..565|62 nt|2| | | | |62+0=62| |rev-compl|
+ggggtacagcagtgcttccaagataatctttggatcagggaccagactcagcatccggcc
+aa
+>M94081|TRAJ30*01|Homo sapiens|F|J-REGION|53090..53146|57 nt|3| | | | |57+0=57| |rev-compl|
+tgaacagagatgacaagatcatctttggaaaagggacacgacttcatattctcccca
+>M14905|TRAJ31*01|Homo sapiens|F|J-REGION|77..132|56 nt|2| | | | |56+0=56| |rev-compl|
+gaataacaatgccagactcatgtttggagatggaactcagctggtggtgaagccca
+>M94081|TRAJ32*01|Homo sapiens|F|J-REGION|49581..49646|66 nt|3| | | | |66+0=66| |rev-compl|
+tgaattatggcggtgctacaaacaagctcatctttggaactggcactctgcttgctgtcc
+agccaa
+>AF532854|TRAJ32*02|Homo sapiens|(F)|J-REGION|240..299|60 nt|3| |1| | |60+0=60|partial in 5'|rev-compl|
+atggtggtgctacaaacaagctcatctttggaactggcactctgcttgctgtccagccaa
+>M94081|TRAJ33*01|Homo sapiens|F|J-REGION|48843..48899|57 nt|3| | | | |57+0=57| |rev-compl|
+tggatagcaactatcagttaatctggggcgctgggaccaagctaattataaagccag
+>M35622|TRAJ34*01|Homo sapiens|F|J-REGION|30..87|58 nt|1| | | | |58+0=58| |rev-compl|
+tcttataacaccgacaagctcatctttgggactgggaccagattacaagtctttccaa
+>M94081|TRAJ35*01|Homo sapiens|ORF|J-REGION|46885..46943|59 nt|2| | | | |59+0=59| |rev-compl|
+gataggctttgggaatgtgctgcattgcgggtccggcactcaagtgattgttttaccac
+>M94081|TRAJ36*01|Homo sapiens|F|J-REGION|45353..45411|59 nt|2| | | | |59+0=59| |rev-compl|
+tcaaactggggcaaacaacctcttctttgggactggaacgagactcaccgttattccct
+>M94081|TRAJ37*01|Homo sapiens|F|J-REGION|43993..44054|62 nt|2| | | | |62+0=62| |rev-compl|
+tggctctggcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc
+ag
+>AJ007774|TRAJ37*02|Homo sapiens|(F)|J-REGION|336..397|62 nt|2| |1| | |62+0=62| |rev-compl|
+tggctctagcaacacaggcaaactaatctttgggcaagggacaactttacaagtaaaacc
+ag
+>M94081|TRAJ38*01|Homo sapiens|F|J-REGION|42473..42534|62 nt|2| | | | |62+0=62| |rev-compl|
+taatgctggcaacaaccgtaagctgatttggggattgggaacaagcctggcagtaaatcc
+ga
+>M94081|TRAJ39*01|Homo sapiens|F|J-REGION|41843..41905|63 nt|3| | | | |63+0=63| |rev-compl|
+tgaataataatgcaggcaacatgctcacctttggagggggaacaaggttaatggtcaaac
+ccc
+>M94081|TRAJ4*01|Homo sapiens|F|J-REGION|82396..82458|63 nt|3| | | | |63+0=63| |rev-compl|
+tgttttctggtggctacaataagctgatttttggagcagggaccaggctggctgtacacc
+cat
+>M35620|TRAJ40*01|Homo sapiens|F|J-REGION|35..95|61 nt|1| | | | |61+0=61| |rev-compl|
+actacctcaggaacctacaaatacatctttggaacaggcaccaggctgaaggttttagca
+a
+>M94081|TRAJ41*01|Homo sapiens|F|J-REGION|37900..37961|62 nt|2| | | | |62+0=62| |rev-compl|
+gaactcaaattccgggtatgcactcaacttcggcaaaggcacctcgctgttggtcacacc
+cc
+>M94081|TRAJ42*01|Homo sapiens|F|J-REGION|37130..37195|66 nt|3| | | | |66+0=66| |rev-compl|
+tgaattatggaggaagccaaggaaatctcatctttggaaaaggcactaaactctctgtta
+aaccaa
+>M94081|TRAJ43*01|Homo sapiens|F|J-REGION|36154..36207|54 nt|3| | | | |54+0=54| |rev-compl|
+acaataacaatgacatgcgctttggagcagggaccagactgacagtaaaaccaa
+>M35619|TRAJ44*01|Homo sapiens|F|J-REGION|30..92|63 nt|3| | | | |63+0=63| |rev-compl|
+taaataccggcactgccagtaaactcacctttgggactggaacaagacttcaggtcacgc
+tcg
+>M94081|TRAJ45*01|Homo sapiens|F|J-REGION|34169..34234|66 nt|3| | | | |66+0=66| |rev-compl|
+tgtattcaggaggaggtgctgacggactcacctttggcaaagggactcatctaatcatcc
+agccct
+>M94081|TRAJ46*01|Homo sapiens|F|J-REGION|33647..33709|63 nt|3| | | | |63+0=63| |rev-compl|
+agaagaaaagcagcggagacaagctgacttttgggaccgggactcgtttagcagttaggc
+cca
+>M94081|TRAJ47*01|Homo sapiens|F|J-REGION|33096..33152|57 nt|3| | | | |57+0=57| |rev-compl|
+tggaatatggaaacaaactggtctttggcgcaggaaccattctgagagtcaagtcct
+>AF033825|TRAJ47*02|Homo sapiens|(F)|J-REGION|312..368|57 nt|3| |1| | |57+0=57| |rev-compl|
+tggaatatggaaacaagctggtctttggcgcaggaaccattctgagagtcaagtcct
+>M94081|TRAJ48*01|Homo sapiens|F|J-REGION|30737..30799|63 nt|3| | | | |63+0=63| |rev-compl|
+tatctaactttggaaatgagaaattaacctttgggactggaacaagactcaccatcatac
+cca
+>M94081|TRAJ49*01|Homo sapiens|F|J-REGION|29734..29789|56 nt|2| | | | |56+0=56| |rev-compl|
+gaacaccggtaaccagttctattttgggacagggacaagtttgacggtcattccaa
+>M94081|TRAJ5*01|Homo sapiens|F|J-REGION|80444..80503|60 nt|3| | | | |60+0=60| |rev-compl|
+tggacacgggcaggagagcacttacttttgggagtggaacaagactccaagtgcaaccaa
+>M94081|TRAJ50*01|Homo sapiens|F|J-REGION|28839..28898|60 nt|3| | | | |60+0=60| |rev-compl|
+tgaaaacctcctacgacaaggtgatatttgggccagggacaagcttatcagtcattccaa
+>M94081|TRAJ51*01|Homo sapiens|P|J-REGION|27429..27491|63 nt|3| | | | |63+0=63| |rev-compl|
+agatgcgtgacagctatgagaagctgatatttggaaaggagacatgactaactgtgaagc
+caa
+>M94081|TRAJ52*01|Homo sapiens|F|J-REGION|26474..26542|69 nt|3| | | | |69+0=69| |rev-compl|
+ctaatgctggtggtactagctatggaaagctgacatttggacaagggaccatcttgactg
+tccatccaa
+>M94081|TRAJ53*01|Homo sapiens|F|J-REGION|23251..23316|66 nt|3| | | | |66+0=66| |rev-compl|
+agaatagtggaggtagcaactataaactgacatttggaaaaggaactctcttaaccgtga
+atccaa
+>M94081|TRAJ54*01|Homo sapiens|F|J-REGION|22534..22593|60 nt|3| | | | |60+0=60| |rev-compl|
+taattcagggagcccagaagctggtatttggccaaggaaccaggctgactatcaacccaa
+>M94081|TRAJ55*01|Homo sapiens|P|J-REGION|21944..22000|57 nt|3| | | | |57+0=57| |rev-compl|
+acaagtgctggtaatgctcctgttggggaaaggggatgagtacaaaaataaatccaa
+>M94081|TRAJ56*01|Homo sapiens|F|J-REGION|19768..19829|62 nt|2| | | | |62+0=62| |rev-compl|
+ttatactggagccaatagtaagctgacatttggaaaaggaataactctgagtgttagacc
+ag
+>M94081|TRAJ57*01|Homo sapiens|F|J-REGION|19119..19181|63 nt|3| | | | |63+0=63| |rev-compl|
+taactcagggcggatctgaaaagctggtctttggaaagggaacgaaactgacagtaaacc
+cat
+>M94081|TRAJ58*01|Homo sapiens|ORF|J-REGION|17954..18016|63 nt|3| | | | |63+0=63| |rev-compl|
+tttaagaaaccagtggctctaggttgacctttggggaaggaacacagctcacagtgaatc
+ctg
+>M94081|TRAJ59*01|Homo sapiens|ORF|J-REGION|16801..16854|54 nt|3| | | | |54+0=54| |rev-compl|
+ggaaggaaggaaacaggaaatttacatttggaatggggacgcaagtgagagtga
+>M16747|TRAJ6*01|Homo sapiens|F|J-REGION|31..92|62 nt|2| | | | |62+0=62| |rev-compl|
+tgcatcaggaggaagctacatacctacatttggaagaggaaccagccttattgttcatcc
+gt
+>M94081|TRAJ60*01|Homo sapiens|P|J-REGION|16554..16610|57 nt|3| | | | |57+0=57| |rev-compl|
+tgaagatcacctagatgctcaactttgggaaggggactgagttaattgtgagcctgg
+>M94081|TRAJ61*01|Homo sapiens|ORF|J-REGION|15564..15623|60 nt|3| | | | |60+0=60| |rev-compl|
+ggtaccgggttaataggaaactgacatttggagccaacactagaggaatcatgaaactca
+>M94081|TRAJ7*01|Homo sapiens|F|J-REGION|77821..77879|59 nt|2| | | | |59+0=59| |rev-compl|
+tgactatgggaacaacagactcgcttttgggaaggggaaccaagtggtggtcataccaa
+>M94081|TRAJ8*01|Homo sapiens|F|J-REGION|76346..76405|60 nt|3| | | | |60+0=60| |rev-compl|
+tgaacacaggctttcagaaacttgtatttggaactggcacccgacttctggtcagtccaa
+>M94081|TRAJ9*01|Homo sapiens|F|J-REGION|75756..75816|61 nt|1| | | | |61+0=61| |rev-compl|
+ggaaatactggaggcttcaaaactatctttggagcaggaacaagactatttgttaaagca
+a