Mercurial > repos > davidvanzessen > plotting_merged

comparison r_wrapper.sh @ 41:46c5d9d396a5 draft

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Uploaded
author davidvanzessen
date Fri, 22 Nov 2013 07:51:11 -0500
parents d26e8c208b5f
children 1b3ef7b2f4a0
comparison
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40:2e2a29d505c7 41:46c5d9d396a5
4 echo $3 4 echo $3
5 5
6 inputFile=$1 6 inputFile=$1
7 outputFile=$2 7 outputFile=$2
8 outputDir=$3 8 outputDir=$3
9 clonalType=$4
9 dir="$(cd "$(dirname "$0")" && pwd)" 10 dir="$(cd "$(dirname "$0")" && pwd)"
10 mkdir $3 11 mkdir $3
11 Rscript --verbose $dir/RScript.r $inputFile $outputDir $outputDir 2>&1 12 Rscript --verbose $dir/RScript.r $inputFile $outputDir $outputDir $clonalType 2>&1
12 echo "<html>" >> $2 13 echo "<html>" >> $2
13 echo "<img src='VPlot.png'/>" >> $2 14 echo "<img src='VPlot.png'/>" >> $2
14 echo "<img src='DPlot.png'/>" >> $2 15 echo "<img src='DPlot.png'/>" >> $2
15 echo "<img src='JPlot.png'/>" >> $2 16 echo "<img src='JPlot.png'/>" >> $2
16 17