Mercurial > repos > davidvanzessen > mutation_analysis

changeset 84:041f94f50b34 draft

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Uploaded
author davidvanzessen
date Tue, 24 May 2016 03:59:44 -0400
parents e1114c791eb7
children 07f7da724a77
files wrapper.sh
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/wrapper.sh	Tue May 24 03:56:51 2016 -0400
+++ b/wrapper.sh	Tue May 24 03:59:44 2016 -0400
@@ -81,7 +81,7 @@
 echo "---------------- merge_and_filter.r ----------------"
 echo "---------------- merge_and_filter.r ----------------<br />" >> $output
 
-Rscript $dir/merge_and_filter.r $PWD/summary.txt $PWD/sequences.txt $PWD/mutationanalysis.txt $PWD/mutationstats.txt $PWD/hotspots.txt $outdir/identified_genes.txt $outdir/merged.txt $outdir/unmatched.txt $method $functionality $unique ${filter_unique} ${class_filter}
+Rscript $dir/merge_and_filter.r $PWD/summary.txt $PWD/sequences.txt $PWD/mutationanalysis.txt $PWD/mutationstats.txt $PWD/hotspots.txt $outdir/identified_genes.txt $outdir/merged.txt $outdir/unmatched.txt $method $functionality $unique ${filter_unique} ${class_filter} 2>&1
 
 echo "---------------- mutation_analysis.r ----------------"
 echo "---------------- mutation_analysis.r ----------------<br />" >> $output