# HG changeset patch
# User davidvanzessen
# Date 1464076784 14400
# Node ID 041f94f50b34495f90ec08085af66fd8e8310906
# Parent  e1114c791eb7a90bd85502e9a01d6197c40d2cca
Uploaded

diff -r e1114c791eb7 -r 041f94f50b34 wrapper.sh
--- a/wrapper.sh	Tue May 24 03:56:51 2016 -0400
+++ b/wrapper.sh	Tue May 24 03:59:44 2016 -0400
@@ -81,7 +81,7 @@
 echo "---------------- merge_and_filter.r ----------------"
 echo "---------------- merge_and_filter.r ----------------<br />" >> $output
 
-Rscript $dir/merge_and_filter.r $PWD/summary.txt $PWD/sequences.txt $PWD/mutationanalysis.txt $PWD/mutationstats.txt $PWD/hotspots.txt $outdir/identified_genes.txt $outdir/merged.txt $outdir/unmatched.txt $method $functionality $unique ${filter_unique} ${class_filter}
+Rscript $dir/merge_and_filter.r $PWD/summary.txt $PWD/sequences.txt $PWD/mutationanalysis.txt $PWD/mutationstats.txt $PWD/hotspots.txt $outdir/identified_genes.txt $outdir/merged.txt $outdir/unmatched.txt $method $functionality $unique ${filter_unique} ${class_filter} 2>&1
 
 echo "---------------- mutation_analysis.r ----------------"
 echo "---------------- mutation_analysis.r ----------------<br />" >> $output