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1 <tool id="mutation_analysis_shm" name="Mutation Analysis" version="1.0">
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2 <description></description>
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3 <command interpreter="bash">
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1
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4 wrapper.sh $in_file $out_file $out_file.files_path ${in_file.name}
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5 </command>
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6 <inputs>
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7 <param name="in_file" type="data" label="IMGT zip file to be analysed" />
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8 </inputs>
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9 <outputs>
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10 <data format="html" name="out_file" label = "Mutation analysis on ${in_file.name}"/>
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11 </outputs>
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12 <help>
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12
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13 Takes an IMGT zip (http://www.imgt.org/HighV-QUEST/search.action) file and creates a summarization of the mutation analysis.
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14 </help>
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12
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15 <requirements>
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13
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16 <requirement type="package" version="0.5.9">blastn</requirement>
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17 </requirements>
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18 </tool>
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