<tool id="mutation_analysis_shm" name="Mutation Analysis" version="1.0">
	<description></description>
	<command interpreter="bash">
		wrapper.sh $in_file $out_file $out_file.files_path ${in_file.name}
	</command>
	<inputs>
		<param name="in_file" type="data" label="IMGT zip file to be analysed" />
	</inputs>
	<outputs>
		<data format="html" name="out_file" label = "Mutation analysis on ${in_file.name}"/>
	</outputs>
	<help>
		Takes an IMGT zip (http://www.imgt.org/HighV-QUEST/search.action) file and creates a summarization of the mutation analysis.
	</help>
	<requirements>
    <requirement type="package" version="0.5.9">bwa</requirement>
	</requirements>
</tool>