Mercurial > repos > davidvanzessen > igparse

comparison igparse.xml @ 3:a6a01df3aff6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Fri, 01 Nov 2013 11:23:17 -0400
parents c86b568de930
children 2390c4eabd24
comparison
equal deleted inserted replaced
2:c86b568de930 3:a6a01df3aff6
1 <tool id="igparse" name="igBLASTreport parser" version="0.2.0"> 1 <tool id="igparse" name="igBLASTreport parser" version="0.2.0">
2 <description>Parse igBLASTn report (output format -m 3)</description> 2 <description>Parse igBLASTn report (output format -m 3)</description>
3 <command interpreter="perl"> 3 <command interpreter="perl">
4 igparse.pl $input $record | grep -v "D:" | cut -f2- > $output 4 igparse.pl $input 0 | grep -v "D:" | cut -f2- > $output
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="input" type="data" format="text" label="igBLASTn report"/> 7 <param name="input" type="data" format="text" label="igBLASTn report"/>
8 <param name="record" type="integer" value="0" label="Choose a single record or 0 for all">
9 <validator type="in_range" min="0" max="1000000" />
10 </param>
11 </inputs> 8 </inputs>
12 <outputs> 9 <outputs>
13 <data name="output" format="tabular" label="${input.name}-parsed" /> 10 <data name="output" format="tabular" label="${input.name}-parsed" />
14 </outputs> 11 </outputs>
15 <help> 12 <help>
16 there is no help 13 Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
17 </help> 14 </help>
18 </tool> 15 </tool>