Mercurial > repos > davidvanzessen > igparse
view igparse.xml @ 0:07cd591055fb draft
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author | davidvanzessen |
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date | Mon, 23 Sep 2013 08:59:50 -0400 |
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children | d55fb6a8df5a |
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<tool id="igparse" name="igBLASTreport parser" version="0.2.0"> <description>Parse igBLASTn report (output format -m 3)</description> <command> perl /usr/local/galaxy/galaxy-dist/tools/igblast/igparse/igparse.pl $input $record | grep -v "D:" | cut -f2- > $output </command> <inputs> <param name="input" type="data" format="text" label="igBLASTn report"/> <param name="record" type="integer" value="0" label="Choose a single record or 0 for all"> <validator type="in_range" min="0" max="1000000" /> </param> </inputs> <outputs> <data name="output" format="tabular" label="${input.name}-parsed" /> </outputs> <help> there is no help </help> </tool>