Mercurial > repos > davidvanzessen > igparse
comparison igparse.xml @ 0:07cd591055fb draft
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| author | davidvanzessen |
|---|---|
| date | Mon, 23 Sep 2013 08:59:50 -0400 |
| parents | |
| children | d55fb6a8df5a |
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| -1:000000000000 | 0:07cd591055fb |
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| 1 <tool id="igparse" name="igBLASTreport parser" version="0.2.0"> | |
| 2 <description>Parse igBLASTn report (output format -m 3)</description> | |
| 3 <command> | |
| 4 perl /usr/local/galaxy/galaxy-dist/tools/igblast/igparse/igparse.pl $input $record | grep -v "D:" | cut -f2- > $output | |
| 5 </command> | |
| 6 <inputs> | |
| 7 <param name="input" type="data" format="text" label="igBLASTn report"/> | |
| 8 <param name="record" type="integer" value="0" label="Choose a single record or 0 for all"> | |
| 9 <validator type="in_range" min="0" max="1000000" /> | |
| 10 </param> | |
| 11 </inputs> | |
| 12 <outputs> | |
| 13 <data name="output" format="tabular" label="${input.name}-parsed" /> | |
| 14 </outputs> | |
| 15 <help> | |
| 16 there is no help | |
| 17 </help> | |
| 18 </tool> |