Mercurial > repos > davidvanzessen > igparse

comparison igparse.xml @ 1:d55fb6a8df5a draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Thu, 26 Sep 2013 11:02:18 -0400
parents 07cd591055fb
children c86b568de930
comparison
equal deleted inserted replaced
0:07cd591055fb 1:d55fb6a8df5a
1 <tool id="igparse" name="igBLASTreport parser" version="0.2.0"> 1 <tool id="igparse" name="igBLASTreport parser" version="0.2.0">
2 <description>Parse igBLASTn report (output format -m 3)</description> 2 <description>Parse igBLASTn report (output format -m 3)</description>
3 <command> 3 <command>
4 perl /usr/local/galaxy/galaxy-dist/tools/igblast/igparse/igparse.pl $input $record | grep -v "D:" | cut -f2- > $output 4 perl igparse.pl $input $record | grep -v "D:" | cut -f2- > $output
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="input" type="data" format="text" label="igBLASTn report"/> 7 <param name="input" type="data" format="text" label="igBLASTn report"/>
8 <param name="record" type="integer" value="0" label="Choose a single record or 0 for all"> 8 <param name="record" type="integer" value="0" label="Choose a single record or 0 for all">
9 <validator type="in_range" min="0" max="1000000" /> 9 <validator type="in_range" min="0" max="1000000" />