Mercurial > repos > davidvanzessen > igblast_human

changeset 53:fe9acb633402 draft

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Uploaded
author davidvanzessen
date Wed, 27 Nov 2013 07:12:36 -0500
parents 8da1f108446d
children ddc765e7142c
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Nov 27 07:06:35 2013 -0500
+++ b/tool_dependencies.xml	Wed Nov 27 07:12:36 2013 -0500
@@ -23,8 +23,14 @@
                 <action type="set_environment">
                 	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
                 </action>
-				<action type="shell_command">echo "$REPOSITORY_INSTALL_DIR"</action>
-				<action type="shell_command">unzip $REPOSITORY_INSTALL_DIR/database.zip -d $INSTALL_DIR/ncbi-igblast-1.0.0/</action>
+                <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
+                <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
+                                
+                <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/internal_data"</action>
+                
+                <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/database"</action>
+                
+                <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file"</action>
             	
                 
             </actions>