Mercurial > repos > davidvanzessen > igblast_human

changeset 54:ddc765e7142c draft

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Uploaded
author davidvanzessen
date Tue, 03 Dec 2013 04:33:59 -0500
parents fe9acb633402
children 99541760fdfe
files tool_dependencies.xml
diffstat 1 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Wed Nov 27 07:12:36 2013 -0500
+++ b/tool_dependencies.xml	Tue Dec 03 04:33:59 2013 -0500
@@ -6,8 +6,6 @@
 	<package name="igBlastn" version="1.0.0"> 
         <install version="1.0">
             <actions>
-				<action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0</action>
-				<action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</action>
             	<action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">
             		ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz
             	</action>
@@ -23,6 +21,7 @@
                 <action type="set_environment">
                 	<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
                 </action>
+
                 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data</action>
                 <action type="make_directory">$INSTALL_DIR/ncbi-igblast-1.0.0/internal_data/human</action>
                                 
@@ -32,11 +31,10 @@
                 
                 <action type="shell_command">wget -r -np -nH --cut-dirs=4 -R index.html -P $INSTALL_DIR/ncbi-igblast-1.0.0 "ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/optional_file"</action>
             	
-                
             </actions>
         </install>
         <readme>
-			Downloads igBlast with an older version of the NCBI database.
+		Downloads igBlast with the latest database provided by NCBI, output may change depending on the database available at ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/
         </readme>
     </package>
 </tool_dependency>