view igblastn.xml @ 55:99541760fdfe draft

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author davidvanzessen
date Thu, 23 Jan 2014 05:35:59 -0500
parents 1c64c977624e
children 39a916965683
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<tool id="igblastn" name="igBLASTn" version="0.1.0">
    <description>Run igBLASTn</description>
    <command interpreter="bash">
		igblastn.sh $input $output
    </command>
    <inputs>
        <param name="input" type="data" format="fasta" label="Fasta file"/>
    </inputs>
    <outputs>
        <data name="output" format="text" label="${input.name}-igBLASTn Report"/>
	<!--<data name="log" format="text" label="log"/>-->
    </outputs>
	<requirements>
		<requirement type="package" version="1.0.0">igBlastn</requirement>
	</requirements>
    <help>
        Step 1 of the Immune Repertoire tools, generates a report to be parsed with the "igparse" tool.
    </help>
</tool>