Mercurial > repos > davidvanzessen > igblast_human

comparison igblastn.xml @ 55:99541760fdfe draft

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author davidvanzessen
date Thu, 23 Jan 2014 05:35:59 -0500
parents 1c64c977624e
children 39a916965683
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54:ddc765e7142c 55:99541760fdfe
1 <tool id="igblastn" name="igBLASTn" version="0.1.0"> 1 <tool id="igblastn" name="igBLASTn" version="0.1.0">
2 <description>Run igBLASTn</description> 2 <description>Run igBLASTn</description>
3 <command> 3 <command interpreter="bash">
4 igblastn -germline_db_V \$IGDATA/database/human_gl_V -germline_db_J \$IGDATA/database/human_gl_J -germline_db_D \$IGDATA/database/human_gl_D -domain_system imgt -query $input -auxiliary_data \$IGDATA/optional_file/human_gl.aux -show_translation -outfmt 3 > $output 4 igblastn.sh $input $output
5 </command> 5 </command>
6 <inputs> 6 <inputs>
7 <param name="input" type="data" format="fasta" label="Fasta file"/> 7 <param name="input" type="data" format="fasta" label="Fasta file"/>
8 </inputs> 8 </inputs>
9 <outputs> 9 <outputs>