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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <set_environment version="1.0">
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4 </set_environment>
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5
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6 <package name="igBlastn" version="1.0.0">
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7 <install version="1.0">
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8 <actions>
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9 <action type="download_by_url" target_filename="ncbi-igblast-1.0.0-x64-linux.tar.gz">ftp://ftp.ncbi.nih.gov/blast/executables/igblast/release/1.0.0/ncbi-igblast-1.0.0-x64-linux.tar.gz</action>
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10 <action type="move_file">
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11 <source>ncbi-igblast-1.0.0-x64-linux.tar.gz</source>
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12 <destination>$INSTALL_DIR</destination>
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13 </action>
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14 <action type="shell_command">tar zxvf $INSTALL_DIR/ncbi-igblast-1.0.0-x64-linux.tar.gz -C $INSTALL_DIR</action>
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15 <action type="set_environment">
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16 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/ncbi-igblast-1.0.0/bin</environment_variable>
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17 </action>
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18 </actions>
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19 </install>
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20 <readme>
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21 Downloads the igblastn-1.0.0 executable from NCBI and uses a fixed database included in this tool.
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22 </readme>
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23 </package>
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24 </tool_dependency>
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