|
9
|
1 <tool id="experimentaldesign_igg" name="ExperimentalDesign" version="1.0">
|
|
|
2 <description> </description>
|
|
0
|
3 <command interpreter="python">
|
|
7
|
4 igblastmerge.py
|
|
4
|
5 #for $i, $f in enumerate($patients)
|
|
|
6 $f.id
|
|
|
7 #for $j, $g in enumerate($f.samples)
|
|
|
8 ${g.sample}
|
|
|
9 #end for
|
|
|
10
|
|
0
|
11 #end for
|
|
|
12 --output $out_file
|
|
|
13 </command>
|
|
|
14 <inputs>
|
|
4
|
15 <repeat name="patients" title="Patients" min="1" default="1">
|
|
|
16 <repeat name="samples" title="Sample" min="1" default="1">
|
|
|
17 <param name="sample" format="tabular" type="data" label="Sample to Process" />
|
|
|
18 </repeat>
|
|
0
|
19 <param name="id" type="text" label="ID" />
|
|
|
20 </repeat>
|
|
|
21 </inputs>
|
|
|
22 <outputs>
|
|
|
23 <data format="tabular" name="out_file" />
|
|
|
24 </outputs>
|
|
|
25 <help>
|
|
1
|
26 Step 3 of the Immune Repertoire tools, merges the parsed reports generated in step 2 into one file with an Sample ID.
|
|
0
|
27 </help>
|
|
|
28
|
|
|
29 </tool>
|
