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1 <tool id="igblastmerge" name="IgBlastMerge" version="1.0">
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4
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2 <description>Multisample</description>
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3 <command interpreter="python">
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4
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4 igblastmergems.py
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5 --input
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6 #for $i, $f in enumerate($patients)
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7 $f.id
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8 #for $j, $g in enumerate($f.samples)
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9 ${g.sample}
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10 #end for
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11
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12 #end for
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13 --output $out_file
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14 </command>
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15 <inputs>
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4
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16 <repeat name="patients" title="Patients" min="1" default="1">
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17 <repeat name="samples" title="Sample" min="1" default="1">
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18 <param name="sample" format="tabular" type="data" label="Sample to Process" />
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19 </repeat>
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20 <param name="id" type="text" label="ID" />
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21 </repeat>
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22 </inputs>
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23 <outputs>
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24 <data format="tabular" name="out_file" />
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25 </outputs>
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26 <help>
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1
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27 Step 3 of the Immune Repertoire tools, merges the parsed reports generated in step 2 into one file with an Sample ID.
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28 </help>
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29
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30 </tool>
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