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1 <?xml version="1.0"?>
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2 <tool_dependency>
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1
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3 <package name="package_r_3_2_1" version="3.2.1">
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8
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4 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
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0
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5 </package>
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6 <package name="alakazam" version="0.2.3">
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6
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7 <install version="1.0">
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0
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8 <actions>
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9 <action type="setup_r_environment">
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8
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10 <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
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5
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11 <package name="package_r_3_2_1" version="3.2.1" />
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0
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12 </repository>
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13 <package>
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10
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14 https://cran.ism.ac.jp/src/contrib/BH_1.60.0-2.tar.gz
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15 </package>
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16 <package>
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17 https://cran.ism.ac.jp/src/contrib/DBI_0.4-1.tar.gz
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18 </package>
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19 <package>
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20 https://cran.ism.ac.jp/src/contrib/lazyeval_0.1.10.tar.gz
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21 </package>
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22 <package>
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23 https://cran.ism.ac.jp/src/contrib/magrittr_1.5.tar.gz
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24 </package>
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25 <package>
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26 https://cran.ism.ac.jp/src/contrib/Rcpp_0.12.5.tar.gz
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27 </package>
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28 <package>
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29 https://cran.ism.ac.jp/src/contrib/R6_2.1.2.tar.gz
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30 </package>
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31 <package>
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32 https://cran.ism.ac.jp/src/contrib/assertthat_0.1.tar.gz
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33 </package>
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34 <package>
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35 https://cran.ism.ac.jp/src/contrib/dplyr_0.4.3.tar.gz
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36 </package>
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37 <package>
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38 https://cran.ism.ac.jp/src/contrib/ade4_1.7-4.tar.gz
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39 </package>
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40 <package>
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8
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41 https://cran.ism.ac.jp/src/contrib/seqinr_3.1-3.tar.gz
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42 </package>
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43 <package>
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10
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44 https://cran.ism.ac.jp/src/contrib/RColorBrewer_1.1-2.tar.gz
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45 </package>
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46 <package>
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47 https://cran.ism.ac.jp/src/contrib/dichromat_2.0-0.tar.gz
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48 </package>
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49 <package>
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50 https://cran.ism.ac.jp/src/contrib/plyr_1.8.3.tar.gz
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51 </package>
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52 <package>
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53 https://cran.ism.ac.jp/src/contrib/munsell_0.4.3.tar.gz
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54 </package>
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55 <package>
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56 https://cran.ism.ac.jp/src/contrib/labeling_0.3.tar.gz
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8
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57 </package>
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58 <package>
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59 https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/scales_0.3.0.tar.gz
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60 </package>
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61 <package>
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10
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62 https://cran.ism.ac.jp/src/contrib/proto_0.3-10.tar.gz
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63 </package>
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64 <package>
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65 https://cran.ism.ac.jp/src/contrib/reshape2_1.4.1.tar.gz
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66 </package>
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67 <package>
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68 https://cran.ism.ac.jp/src/contrib/gtable_0.2.0.tar.gz
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69 </package>
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70 <package>
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71 https://cran.ism.ac.jp/src/contrib/digest_0.6.9.tar.gz
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72 </package>
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73 <package>
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8
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74 https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/ggplot2_1.0.1.tar.gz
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75 </package>
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76 <package>
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77 https://github.com/bgruening/download_store/raw/master/monocle/igraph_0.7.1.tar.gz
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78 </package>
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79 <package>
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0
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80 https://bitbucket.org/kleinstein/alakazam/downloads/alakazam_0.2.3.tar.gz
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81 </package>
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82 </action>
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83 </actions>
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84 </install>
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85 </package>
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86 </tool_dependency>
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