Mercurial > repos > davidvanzessen > alakazam

view tool_dependencies.xml @ 10:94712d05ebea draft

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author davidvanzessen
date Tue, 17 May 2016 07:39:06 -0400
parents db7ff40afce7
children a9016950f94d
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<?xml version="1.0"?>
<tool_dependency>
    <package name="package_r_3_2_1" version="3.2.1">
      <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="alakazam" version="0.2.3">
        <install version="1.0">
            <actions>
                <action type="setup_r_environment">
                    <repository changeset_revision="77d439695328" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="package_r_3_2_1" version="3.2.1" />
                    </repository>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/BH_1.60.0-2.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/DBI_0.4-1.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/lazyeval_0.1.10.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/magrittr_1.5.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/Rcpp_0.12.5.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/R6_2.1.2.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/assertthat_0.1.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/dplyr_0.4.3.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/ade4_1.7-4.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/seqinr_3.1-3.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/RColorBrewer_1.1-2.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/dichromat_2.0-0.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/plyr_1.8.3.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/munsell_0.4.3.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/labeling_0.3.tar.gz
                    </package>
                    <package>
                        https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/scales_0.3.0.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/proto_0.3-10.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/reshape2_1.4.1.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/gtable_0.2.0.tar.gz
                    </package>
                    <package>
                        https://cran.ism.ac.jp/src/contrib/digest_0.6.9.tar.gz
                    </package>
                    <package>
                        https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/ggplot2_1.0.1.tar.gz
                    </package>
                    <package>
                        https://github.com/bgruening/download_store/raw/master/monocle/igraph_0.7.1.tar.gz
                    </package>
                    <package>
                        https://bitbucket.org/kleinstein/alakazam/downloads/alakazam_0.2.3.tar.gz
                    </package>
                </action>
            </actions>
        </install>
    </package>
</tool_dependency>