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31
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1 from galaxy.datatypes.tabular import Tabular
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4
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2
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9
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3 class FlapjackFormat(Text):
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4 file_ext = "flapjack"
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5
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28
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6 class FlapjackMapFormat(Tabular):
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4
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7 file_ext = "fjmap"
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8
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9 def sniff( self, filename ):
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10 h = open(filename)
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11 line = h.readline()
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12 if line.rstrip() != "# fjFile = MAP":
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13 h.close()
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14 return False
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15 return True
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16
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28
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17 class FlapjackGenotypeFormat(Tabular):
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4
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18 file_ext = "fjgenotype"
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19
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20 def sniff( self, filename ):
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21 h = open(filename)
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22 line = h.readline()
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23 if line.rstrip() != "# fjFile = GENOTYPE":
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24 h.close()
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25 return False
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26 return True
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27
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28
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28 class FlapjackPhenotypeFormat(Tabular):
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4
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29 file_ext = "fjphenotye"
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30
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31 def sniff( self, filename ):
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32 h = open(filename)
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33 line = h.readline()
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34 if line.rstrip() != "# fjFile = PHENOTYPE":
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35 h.close()
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36 return False
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37 return True
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38
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28
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39 class FlapjackQtlFormat(Tabular):
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4
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40 file_ext = "fjqtl"
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41
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42 def sniff( self, filename ):
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43 h = open(filename)
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44 line = h.readline()
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45 if line.rstrip() != "# fjFile = QTL":
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46 h.close()
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47 return False
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48 return True
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49
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28
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50 class FlapjackGraphFormat(Tabular):
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4
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51 file_ext = "fjgraph"
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52
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53 def sniff( self, filename ):
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54 h = open(filename)
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55 line = h.readline()
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56 if line.rstrip() != "# fjFile = GRAPH":
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57 h.close()
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58 return False
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59 return True |
