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32
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1 from galaxy.datatypes.data import Text
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31
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2 from galaxy.datatypes.tabular import Tabular
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4
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3
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9
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4 class FlapjackFormat(Text):
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5 file_ext = "flapjack"
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6
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28
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7 class FlapjackMapFormat(Tabular):
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4
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8 file_ext = "fjmap"
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9
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10 def sniff( self, filename ):
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11 h = open(filename)
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12 line = h.readline()
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13 if line.rstrip() != "# fjFile = MAP":
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14 h.close()
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15 return False
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16 return True
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17
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28
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18 class FlapjackGenotypeFormat(Tabular):
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4
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19 file_ext = "fjgenotype"
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20
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21 def sniff( self, filename ):
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22 h = open(filename)
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23 line = h.readline()
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24 if line.rstrip() != "# fjFile = GENOTYPE":
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25 h.close()
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26 return False
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27 return True
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28
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28
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29 class FlapjackPhenotypeFormat(Tabular):
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4
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30 file_ext = "fjphenotye"
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31
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32 def sniff( self, filename ):
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33 h = open(filename)
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34 line = h.readline()
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35 if line.rstrip() != "# fjFile = PHENOTYPE":
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36 h.close()
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37 return False
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38 return True
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39
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28
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40 class FlapjackQtlFormat(Tabular):
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4
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41 file_ext = "fjqtl"
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42
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43 def sniff( self, filename ):
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44 h = open(filename)
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45 line = h.readline()
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46 if line.rstrip() != "# fjFile = QTL":
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47 h.close()
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48 return False
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49 return True
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50
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28
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51 class FlapjackGraphFormat(Tabular):
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4
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52 file_ext = "fjgraph"
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53
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54 def sniff( self, filename ):
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55 h = open(filename)
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56 line = h.readline()
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57 if line.rstrip() != "# fjFile = GRAPH":
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58 h.close()
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59 return False
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60 return True |
