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planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
author climate
date Fri, 27 Sep 2024 19:34:28 +0000
parents 7fa6bc1fb588
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
parents:
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1 #!/usr/bin/env bash
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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2
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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3 if [ -f download.tar.gz ]; then
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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4 tar zxvf download.tar.gz
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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5 cat *.grib > tmp.grib
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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6 cdo setgridtype,regular tmp.grib tmpg.grib
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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7 cdo -f nc -t ecmwf copy tmpg.grib tmp.nc
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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8 elif [ -f download.zip ]; then
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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9 unzip download.zip
1
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
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10 files=(*.nc)
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
parents: 0
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11 if [ -e "${files[0]}" ]; then
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
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12 mv ${files[0]} tmp.nc
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
parents: 0
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13 else
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
parents: 0
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14 cat *.grib > tmp.grib
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
parents: 0
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15 cdo setgridtype,regular tmp.grib tmpg.grib
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
parents: 0
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16 cdo -f nc -t ecmwf copy tmpg.grib tmp.nc
eadc0e7f9abd planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit e8074c9f6817bba5ca6cb322434ca5e4412b34cf
climate
parents: 0
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17 fi
0
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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18 elif [ -f download.grib ]; then
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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19 cdo -f nc -t ecmwf copy download.grib tmp.nc
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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20 elif [ -f download.nc ]; then
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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21 mv download.nc tmp.nc
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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22 else
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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23 echo "No data found! Check your request and/or credentials."
7fa6bc1fb588 "planemo upload for repository https://github.com/NordicESMhub/galaxy-tools/tree/master/tools/c3s commit 04069ef63198279caf3d97de5a58fb32df12c811"
climate
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24 fi