annotate data_manager_conf.xml @ 0:c88d28377bd1 default tip

Create an example blastdb Data Manager.
author Daniel Blankenberg <dan@bx.psu.edu>
date Wed, 11 Dec 2013 16:24:11 -0500
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c88d28377bd1 Create an example blastdb Data Manager.
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1 <?xml version="1.0"?>
c88d28377bd1 Create an example blastdb Data Manager.
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2 <data_managers>
c88d28377bd1 Create an example blastdb Data Manager.
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3 <data_manager tool_file="data_manager/blastdb.xml" id="ncbi_blast_plus_update_blastdb">
c88d28377bd1 Create an example blastdb Data Manager.
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4 <data_table name="blastdb">
c88d28377bd1 Create an example blastdb Data Manager.
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5 <output>
c88d28377bd1 Create an example blastdb Data Manager.
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6 <column name="value" />
c88d28377bd1 Create an example blastdb Data Manager.
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7 <column name="name" />
c88d28377bd1 Create an example blastdb Data Manager.
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8 <column name="path" output_ref="out_file" >
c88d28377bd1 Create an example blastdb Data Manager.
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9 <move type="directory">
c88d28377bd1 Create an example blastdb Data Manager.
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">blastdb/${path}</target>
c88d28377bd1 Create an example blastdb Data Manager.
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11 </move>
c88d28377bd1 Create an example blastdb Data Manager.
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/blastdb/${path}/${nucleotide_alias_name}</value_translation>
c88d28377bd1 Create an example blastdb Data Manager.
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13 <value_translation type="function">abspath</value_translation>
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14 </column>
c88d28377bd1 Create an example blastdb Data Manager.
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15 </output>
c88d28377bd1 Create an example blastdb Data Manager.
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16 </data_table>
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17 </data_manager>
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18 </data_managers>