Mercurial > repos > blankenberg > data_manager_example_blastdb_ncbi_update_blastdb
comparison data_manager_conf.xml @ 0:c88d28377bd1 default tip
Create an example blastdb Data Manager.
author | Daniel Blankenberg <dan@bx.psu.edu> |
---|---|
date | Wed, 11 Dec 2013 16:24:11 -0500 |
parents | |
children |
comparison
equal
deleted
inserted
replaced
-1:000000000000 | 0:c88d28377bd1 |
---|---|
1 <?xml version="1.0"?> | |
2 <data_managers> | |
3 <data_manager tool_file="data_manager/blastdb.xml" id="ncbi_blast_plus_update_blastdb"> | |
4 <data_table name="blastdb"> | |
5 <output> | |
6 <column name="value" /> | |
7 <column name="name" /> | |
8 <column name="path" output_ref="out_file" > | |
9 <move type="directory"> | |
10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">blastdb/${path}</target> | |
11 </move> | |
12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/blastdb/${path}/${nucleotide_alias_name}</value_translation> | |
13 <value_translation type="function">abspath</value_translation> | |
14 </column> | |
15 </output> | |
16 </data_table> | |
17 </data_manager> | |
18 </data_managers> |