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1 Galaxy datatypes for HOMER tools
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2 ================================
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3
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4 These HOMER datatypes are copyright 2013 by Björn Grüning.
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5
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6 See the licence text below.
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7
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8
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9 History
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10 =======
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11
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12 ======= ======================================================================
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13 Version Changes
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14 ------- ----------------------------------------------------------------------
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15 v0.0.1 - First release.
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16 ======= ======================================================================
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17
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18
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19 Installation
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20 ============
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21
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22 Doing this automatically via the Galaxy Tool Shed is probably simplest.
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23
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24
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25 Manual Installation
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26 ===================
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27
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28 Normally you would install this via the Galaxy ToolShed, which would move
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29 the provided homer.py file into a suitable location and process the
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30 datatypes_conf.xml entry to be combined with your local configuration.
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31
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32 However, if you really want to this should work for a manual install. Add
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33 the following lines to the datatypes_conf.xml file in the Galaxy main folder::
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34
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35 <datatype extension="homer_tagdir" type="galaxy.datatypes.homer:TagDirectory" mimetype="text/html" display_in_upload="false"/>
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36
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37 Also create the file lib/galaxy/datatypes/homer.py by moving, copying or linking
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38 the homer.py file provided in this tar-ball. Finally add 'import homer' near
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39 the start of file lib/galaxy/datatypes/registry.py (after the other import
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40 lines).
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41
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42
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43 Bug Reports
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44 ===========
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45
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46 You can file an issue here https://github.com/bgruening/galaxytools/issues or ask
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47 us on the Galaxy development list http://lists.bx.psu.edu/listinfo/galaxy-dev
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48
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49
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50 Developers
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51 ==========
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52
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53 Development is happening here:
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54
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55 https://github.com/bgruening/galaxytools/
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56
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57
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58 Licence (MIT)
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59 =============
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60
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61 Permission is hereby granted, free of charge, to any person obtaining a copy
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62 of this software and associated documentation files (the "Software"), to deal
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63 in the Software without restriction, including without limitation the rights
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64 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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65 copies of the Software, and to permit persons to whom the Software is
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66 furnished to do so, subject to the following conditions:
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67
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68 The above copyright notice and this permission notice shall be included in
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69 all copies or substantial portions of the Software.
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70
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71 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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72 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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73 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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74 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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75 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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76 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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77 THE SOFTWARE.
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78
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79 NOTE: This is the licence for the Galaxy HOMER datatypes **only**. HOMER
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80 and associated data files are available and licenced separately.
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