Mercurial > repos > bgruening > upload_testing
diff README.rst @ 54:675d25a0b9d4
Uploaded
| author | bgruening |
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| date | Mon, 12 Aug 2013 08:16:21 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Mon Aug 12 08:16:21 2013 -0400 @@ -0,0 +1,80 @@ +Galaxy datatypes for HOMER tools +================================ + +These HOMER datatypes are copyright 2013 by Björn Grüning. + +See the licence text below. + + +History +======= + +======= ====================================================================== +Version Changes +------- ---------------------------------------------------------------------- +v0.0.1 - First release. +======= ====================================================================== + + +Installation +============ + +Doing this automatically via the Galaxy Tool Shed is probably simplest. + + +Manual Installation +=================== + +Normally you would install this via the Galaxy ToolShed, which would move +the provided homer.py file into a suitable location and process the +datatypes_conf.xml entry to be combined with your local configuration. + +However, if you really want to this should work for a manual install. Add +the following lines to the datatypes_conf.xml file in the Galaxy main folder:: + + <datatype extension="homer_tagdir" type="galaxy.datatypes.homer:TagDirectory" mimetype="text/html" display_in_upload="false"/> + +Also create the file lib/galaxy/datatypes/homer.py by moving, copying or linking +the homer.py file provided in this tar-ball. Finally add 'import homer' near +the start of file lib/galaxy/datatypes/registry.py (after the other import +lines). + + +Bug Reports +=========== + +You can file an issue here https://github.com/bgruening/galaxytools/issues or ask +us on the Galaxy development list http://lists.bx.psu.edu/listinfo/galaxy-dev + + +Developers +========== + +Development is happening here: + + https://github.com/bgruening/galaxytools/ + + +Licence (MIT) +============= + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in +all copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN +THE SOFTWARE. + +NOTE: This is the licence for the Galaxy HOMER datatypes **only**. HOMER +and associated data files are available and licenced separately.
