text_processing: sort.xml annotate

annotate sort.xml @ 30:5907d248dee3 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d

author	bgruening
date	Sat, 17 Jan 2026 00:56:56 +0000
parents	4f7cade041cb
children

rev	line source
26 f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7 bgruening parents: 18 diff changeset	1 <tool id="tp_sort_header_tool" name="Sort" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	2 <description>data in ascending or descending order</description>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	3 <macros>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	4 <import>macros.xml</import>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	5 </macros>
26 f22a309187a3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit c2b1677d1c94433f777c2dc28ac8eec0a99cc6a7 bgruening parents: 18 diff changeset	6 <expand macro="creator"/>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	7 <expand macro="requirements">
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	8 <requirement type="package" version="4.9">sed</requirement>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	9 </expand>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	10 <version_command>sort --version \| head -n 1</version_command>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	11 <command>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	12 <![CDATA[
56e80527c482 Uploaded bgruening parents: 3 diff changeset	13 (
29 4f7cade041cb planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 4dd118c84ed4d6157303e71438c24446ec4b4f31 bgruening parents: 27 diff changeset	14 export LC_ALL=C;
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	15 #if int($header) > 0:
7 d64eace4f9f3 Uploaded bgruening parents: 6 diff changeset	16 sed -u '${header}'q &&
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	17 #end if
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	18
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	19 sort $unique --stable -t ' '
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	20
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	21 #for $key in $sortkeys:
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	22 #if $key.start_charpos and $key.end_charpos:
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	23 -k ${key.column}.${key.start_charpos}${key.ignore_leading_blanks},${key.column}.${key.end_charpos}${key.ignore_leading_blanks}${key.order}${key.style}${key.ignore_case}
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	24 #elif $key.start_charpos:
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	25 -k ${key.column}.${key.start_charpos}${key.ignore_leading_blanks},${key.column}${key.order}${key.style}${key.ignore_case}
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	26 #elif $key.end_charpos:
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	27 -k ${key.column}${key.ignore_leading_blanks},${key.column}.${key.end_charpos}${key.ignore_leading_blanks}${key.order}${key.style}${key.ignore_case}
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	28 #else:
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	29 -k ${key.column}${key.ignore_leading_blanks},${key.column}${key.order}${key.style}${key.ignore_case}
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	30 #end if
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	31 #end for
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	32
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	33 ) < '${infile}' > '${outfile}'
56e80527c482 Uploaded bgruening parents: 3 diff changeset	34 ]]>
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	35 </command>
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	36 <inputs>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	37 <param format="tabular" name="infile" type="data" label="Sort Query" />
10 c78b1767db2b planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 10052765d6b712cf7d38356af4251fcc38a339b6-dirty bgruening parents: 8 diff changeset	38 <param name="header" type="integer" value="0"
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	39 label="Number of header lines" help="Header lines will be copied to the output unchanged without operating on them.">
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	40 <validator type="in_range" message="Negative values are not allowed." min="0"/>
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	41 </param>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	42
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	43 <repeat name="sortkeys" title="Column selections" min="1">
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	44 <param name="column" label="Sort on column" type="data_column" data_ref="infile" accept_default="true" />
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	45 <param name="start_charpos" label="considering its characters from" type="integer" min="1" optional="true" help="Leave empty (or set to 1) to use the column value starting from its first character." />
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	46 <param name="end_charpos" label="to and including" type="integer" min="1" optional="true" help="Leave empty to use the column value up to and including its last character." />
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	47 <param name="order" type="select" display="radio" label="in">
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	48 <option value="">Ascending order</option>
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	49 <option value="r">Descending order</option>
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	50 </param>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	51 <param name="style" type="select" display="radio" label="using sort flavor">
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	52 <option value="n">Fast numeric sort (-n)</option>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	53 <option value="g">General numeric sort ( scientific notation -g)</option>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	54 <option value="V">Natural/Version sort (-V) </option>
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	55 <option value="">Alphabetical sort</option>
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	56 <option value="h">Human-readable numbers (-h)</option>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	57 <option value="R">Random order (-R)</option>
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	58 </param>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	59 <param name="ignore_case" type="boolean" checked="false" truevalue="f" falsevalue=""
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	60 label="ignoring case" help="Turn lowercase symbols to upper case before comparing values in this column. (-f)" />
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	61 <param name="ignore_leading_blanks" type="boolean" checked="false" truevalue="b" falsevalue=""
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	62 label="ignoring leading blanks" help="This option can be useful with Alphabetical and Natural sort (which treat spaces as actual characters) or to prevent unwanted offsets if you specified a range of character positions to consider." />
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	63 </repeat>
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	64
a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	65 <param name="unique" type="boolean" checked="false" truevalue="--unique" falsevalue=""
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	66 label="Output unique values" help="Print only unique values, based on sorted key columns. See help section for details. (--unique)" />
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	67 </inputs>
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	68 <outputs>
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	69 <data name="outfile" format_source="infile" metadata_source="infile"/>
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	70 </outputs>
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	71 <tests>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	72 <test expect_num_outputs="1">
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	73 <param name="infile" value="sort1.bed"/>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	74 <param name="header" value="3"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	75 <repeat name="sortkeys">
56e80527c482 Uploaded bgruening parents: 3 diff changeset	76 <param name="column" value="1"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	77 <param name="style" value=""/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	78 <param name="order" value=""/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	79 </repeat>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	80 <repeat name="sortkeys">
56e80527c482 Uploaded bgruening parents: 3 diff changeset	81 <param name="column" value="3"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	82 <param name="style" value="n"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	83 <param name="order" value="r"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	84 </repeat>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	85 <output name="outfile" file="sort_result1.bed"/>
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	86 </test>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	87 <test expect_num_outputs="1">
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	88 <param name="infile" value="sort1.bed"/>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	89 <param name="header" value="3"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	90 <repeat name="sortkeys">
56e80527c482 Uploaded bgruening parents: 3 diff changeset	91 <param name="column" value="1"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	92 <param name="style" value=""/>
8 fa7f88da29d7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 369e40078146d00608d52205bb8cee66ae735b76-dirty bgruening parents: 7 diff changeset	93 <param name="order" value=""/>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	94 </repeat>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	95 <repeat name="sortkeys">
56e80527c482 Uploaded bgruening parents: 3 diff changeset	96 <param name="column" value="3"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	97 <param name="style" value="n"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	98 <param name="order" value=""/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	99 </repeat>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	100 <output name="outfile" file="sort_result2.bed"/>
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	101 </test>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	102 <test expect_num_outputs="1">
6 8928e6d1e7ba Uploaded bgruening parents: 4 diff changeset	103 <param name="infile" value="sort2.bed"/>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	104 <repeat name="sortkeys">
56e80527c482 Uploaded bgruening parents: 3 diff changeset	105 <param name="column" value="5"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	106 <param name="style" value="g"/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	107 <param name="order" value=""/>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	108 </repeat>
56e80527c482 Uploaded bgruening parents: 3 diff changeset	109 <output name="outfile" file="sort_result3.bed"/>
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	110 </test>
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	111 <test expect_num_outputs="1">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	112 <param name="infile" value="sort3.tabular"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	113 <param name="header" value="0"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	114 <param name="unique" value="false"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	115 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	116 <param name="column" value="2"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	117 <param name="start_charpos" value="7"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	118 <param name="order" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	119 <param name="style" value="n"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	120 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	121 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	122 <param name="column" value="2"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	123 <param name="start_charpos" value="4"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	124 <param name="end_charpos" value="5"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	125 <param name="order" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	126 <param name="style" value="n"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	127 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	128 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	129 <param name="column" value="2"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	130 <param name="start_charpos" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	131 <param name="end_charpos" value="2"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	132 <param name="order" value="r"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	133 <param name="style" value="n"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	134 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	135 <output name="outfile" file="sorted3.tabular" ftype="tabular" />
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	136 </test>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	137 <!-- Test ignore_case param -->
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	138 <test expect_num_outputs="1">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	139 <param name="infile" value="sort4.tabular"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	140 <param name="header" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	141 <param name="unique" value="false"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	142 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	143 <param name="column" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	144 <param name="order" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	145 <param name="style" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	146 <param name="ignore_case" value="true"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	147 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	148 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	149 <param name="column" value="3"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	150 <param name="order" value="r"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	151 <param name="style" value="n"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	152 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	153 <output name="outfile" file="sorted4_partial.tabular" ftype="tabular" />
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	154 </test>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	155 <!-- Test ignore_leading_blanks param -->
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	156 <test expect_num_outputs="1">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	157 <param name="infile" value="sort4.tabular"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	158 <param name="header" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	159 <param name="unique" value="false"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	160 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	161 <param name="column" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	162 <param name="start_charpos" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	163 <param name="end_charpos" value="4"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	164 <param name="order" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	165 <param name="style" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	166 <param name="ignore_case" value="true"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	167 <param name="ignore_leading_blanks" value="true"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	168 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	169 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	170 <param name="column" value="1"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	171 <param name="start_charpos" value="5"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	172 <param name="order" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	173 <param name="style" value=""/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	174 <param name="ignore_case" value="true"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	175 <param name="ignore_leading_blanks" value="true"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	176 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	177 <repeat name="sortkeys">
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	178 <param name="column" value="3"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	179 <param name="order" value="r"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	180 <param name="style" value="n"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	181 <param name="ignore_leading_blanks" value="true"/>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	182 </repeat>
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	183 <output name="outfile" file="sorted4.tabular" ftype="tabular" />
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	184 </test>
1 a4ad586d1403 Uploaded bgruening parents: 0 diff changeset	185 </tests>
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	186 <help>
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	187 <![CDATA[
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	188 What it does
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	189
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	190 This tool sorts an input file.
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	191
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	192 -----
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	193
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	194 Sorting Styles
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	195
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	196 * Fast Numeric: sort by numeric values. Handles integer values (e.g. 43, 134) and decimal-point values (e.g. 3.14). Does not handle scientific notation (e.g. -2.32e2).
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	197 * General Numeric: sort by numeric values. Handles all numeric notations (including scientific notation). Slower than fast numeric, so use only when necessary.
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	198 * Natural Sort: Sort in 'natural' order (natural to humans, not to computers). See example below.
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	199 * Alphabetical sort: Sort in strict alphabetical order. See example below.
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	200 * Human-readable numbers: Sort human readble numbers (e.g. 1G > 2M > 3K > 400)
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	201 * Random order: return lines in random order.
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	202
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	203 ------
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	204
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	205 Example - Header line
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	206
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	207 Input file (note first line is a header line, should not be sorted)::
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	208
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	209 Fruit Color Price
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	210 Banana Yellow 4.1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	211 Avocado Green 8.0
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	212 Apple Red 3.0
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	213 Melon Green 6.1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	214
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	215 Sorting by numeric order on column 3, with header, will return::
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	216
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	217 Fruit Color Price
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	218 Apple Red 3.0
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	219 Banana Yellow 4.1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	220 Melon Green 6.1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	221 Avocado Green 8.0
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	222
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	223
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	224 -----
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	225
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	226 Example - Natural vs. Alphabetical sorting
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	227
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	228 Given the following list::
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	229
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	230 chr4
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	231 chr13
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	232 chr1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	233 chr10
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	234 chr20
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	235 chr2
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	236
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	237 Alphabetical sort would produce the following sorted list::
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	238
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	239 chr1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	240 chr10
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	241 chr13
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	242 chr2
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	243 chr20
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	244 chr4
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	245
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	246 Natural Sort would produce the following sorted list::
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	247
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	248 chr1
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	249 chr2
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	250 chr4
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	251 chr10
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	252 chr13
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	253 chr20
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	254
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	255
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	256 .. class:: infomark
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	257
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	258 If you're planning to use the file with another tool that expected sorted files (such as join), you should use the Alphabetical sort, not the Natural Sort. Natural sort order is easier for humans, but is unnatural for computer programs.
ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	259
30 5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	260 -----
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	261
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	262 Example - Sorting based on parts of column values
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	263
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	264 The above column of chromosomes, with their constant prefix, could have been sorted in natural order also with the Fast numeric sort and considering its characters from character 4 only.
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	265
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	266 In general, sorting based on just a range of characters in a column can be useful for sorting values with internal structure, in a single tool run.
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	267
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	268 Consider, for example, the following column of dates, which is unfortunately not ISO-8601 formatted::
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	269
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	270 10/24/2025
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	271 09/18/1974
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	272 12/16/1998
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	273 03/04/2007
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	274
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	275 You could modify these values with other tools first, but you can achieve correct chronological sort order with a single run of the sort tool like this:
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	276
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	277 - Do a Fast numeric sort on the column considering its characters from character 7 (the start of the year).
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	278 - Resolve ties (using another column selection section) with another Fast numeric sort on the same column considering its characters from character 1 to and including character 2 (the month representation).
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	279 - Resolve remaining ties with a third Fast numeric sort on again the same column considering its characters from character 4 to and including character 5 (the day representation).
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	280
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	281 This will result in the ascending chronological order::
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	282
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	283 09/18/1974
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	284 11/17/1998
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	285 11/18/1998
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	286 12/16/1998
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	287 03/04/2007
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	288 10/24/2025
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	289
5907d248dee3 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit 28d2fcf2649b999762fbd94bd648485b916f2f0d bgruening parents: 29 diff changeset	290 Before relying on in-column character ranges, make extra sure that all values are formatted consistently (in the above example, that all dates use two digits for days and months and the same overall date format).
4 56e80527c482 Uploaded bgruening parents: 3 diff changeset	291 ]]>
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	292 </help>
14 7725ab6dab67 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/text_processing/text_processing commit b'e6ee273f75fff61d1e419283fa8088528cf59470\n' bgruening parents: 13 diff changeset	293 <expand macro="citations" />
0 ec66f9d90ef0 initial uploaded bgruening parents: diff changeset	294 </tool>

Mercurial > repos > bgruening > text_processing

annotate sort.xml @ 30:5907d248dee3 draft default tip